Detailed information of evm.model.contig_50158.1 in Platygyra sinensis

Genomic Location: contig_50158:158...6313
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04180
all species →		LTVLow temperature viability protein FamilyInterproscan
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR007307
all species →		FamilyLow temperature viability protein Ltv1Interproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21531
all species →		LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0042274
all species →		Biological Processribosomal small subunit biogenesisInterproscan
GO:0000056
all species →		Biological Processribosomal small subunit export from nucleusInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0030688
all species →		Cellular Componentpreribosome, small subunit precursorInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.contig_50158.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP