Gene detail

Detailed information of evm.model.contig_51312.3 in Platygyra sinensis

Genomic Location: contig_51312:14570...19736
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_51312.3

ATGAGCCCTTACATGAATAAAACAGTGTCCAGAAAGAGAGGGAAGGAAAGGGGTATCAACAGGTTCAGCAAAGATCTCGCCAGGGTCTTTGGTCTGCAGAAGATCAAGGGTTTTCCTAAGGACAATGTTGAGTGGCTGCAACTGCAGGTGAAGGTGAAACAACATGTTGTGGACCTGCAGTTGCAGCCACTCAACATTGTCCTTAGGAAAACCCTTGATCTTCTGCAGACCAAAGACCCTGGCGAGATCTTTGCTGAACCTGTTGATACTGATGAGGTTACAGACTATCTTGATGTTATTGATGAACCCATGGATTTCTCAACAATATCAAAGCGCATTGAAGACAATCACTACACAGCCATGGAGCAGTTTGAGCATGATTTCAACCTGATCATTAGCAACTGTCTGAGGTACAATGCACCAGACACCATCTACTACCGGGCAGCACTCAAACTGCGAGACCAGGGACGTCCCATTGTGCGTGCAGCCAGACGGCAGGTGGAACGTGCTGGTATTGACCCAGTCACTGGGCTACACACTGAGGAGCCTCCTACACTTGCTGACAGGGAGCCAACTGAGGAAGACTTTATCCTGACAGATGAACAGAGAAGAGACATGACACTGGAGGAACAATTGAAAGATTTACAGGAAAAACTGGACATGACTCAGGCTATAAAACATGGAGGTGTGAGAGCAACGCGAGTTAGAATGCTGCGTAAAGAGATCGCACTTGTCAGAAGGAAACTGAACCAGGAAAAGAGGCAACTTTCAGAATCGAGTGTTTGCGGTCTGGAGGTATCTAGCCTCGGCGAGCCTTGTCTGTCACCGCTGGATGGCGAGCAACCACTGAAGAAGTTCAGACCCATTGACGAGAACGAAGCACTGAACGGCGACCCAATCCCGGCCAAGAGCTTGGACGCTGAAGACAATCGGTTAACAGGGGACAGCCTGTTGAACAGCAGGGCCACAGCGAACCCTAGTCCTGGAACCAGTCGACGAAGCGGCATCCTGTTCAATAAAGGAAGGCACCGAGCTAGACGGAACCTGTCAGCAGGGGCGGATAAGTTCCCGTTTGACATCTTATCTACGGCAAACCATGTGCTAAAAACGCCTGAGAATGACAGAACATTTGATCCAGTCAGCACTGAGTGTCAGGTTACGGAAAATCTACACACGGAGGAAGCTGGAGATGATGATGTGGTGTTTGAGGAGAGGCATCAGCCAGCGCCCAAAGAGGACAAGAAAGCACAGAAGCGGTCTTGTAATGACAGCGTGGGCAACAATGATACGTGTTATGTCCCGAAGAAGACTTACAAAACCGAGCTGGGCAAGTTGATCGAAGATGCAACAATGCTTCCCATGTTCGATTCACACTCGTCTGACAGAGTCAACAATCACTTCGCGTACACGAATGGGTTACGGCAGCGTTCGTATCGCTCGTACACCAGCGGTTCAGAATCGGATATCAGTGATATCCGAATGAACGGCACTCGTGCGTCCCGAGAACTCTGTCGGAAACTATCGGCGCTTTCCGAAGACGAACTTAGCACGACGGACACGGAAAACAGTTCAACTGATAATCGAGTGATGAATGGACCGGTGGATGGAAAGAGGAAGAAAAAGGCGGCACCAAGGCCTCGGAAAACAACGACTTCAGATTCAGAGATGGCCGACCTACCTCCTTTACAGCCATTGGATTTGGTTTGGGCGAAGTGCCGCGGATATCCTTCTTATCCAGCCTTGATCATAAATCCTCGAACAAAGAAAGGTTTCCTTCACCGTGGCGTGCCCATTCCTGTTCCCCCTGAGGATGTTTTGAAGGACCGGGCCATTACAGAAGAACATCTTTACCTTGTATTGTTCTTTGACACAAGACGAACTTGGCAATGGCTTCCTCGACACAAACTCGAACCTTTAGGGCAGAACGAAGAACGAGACGACAACAAGTTACAGGAGGGTCGCAAAACATCCATGAGAAAATCCGTGATGATGGCTTACCAGCGCGCTATTATCCACCGAGACCAAGTGGAGAGGGGTGGATCCCGAGACTCCGACGACGAAGACGACGAGGATTATGAGGAAGACAATGCCGACGACGATGATGACGTAGATCGACGAGTGAATGAAAATGGCAACGAGGCTGAGGACGATGAAGAAAGCGATAACGACGATGATGACAATGATGAGCATGACCCGCTGGAGGAAAATGGATTTGTATAG

Transcript

evm.model.contig_51312.3

ATGAGCccttacatgaataaaacagTGTCCAGAAAGAGAGGGAAGGAAAGGGGTATCAACAGGTTCAGCAAAGATCTCGCCAGGGTCTTTGGTCTGCAGAAGATCAAGGGTTTTCCTAAGGACAATGTTGAGTGGCTGCAACTGCAGGTGAAGGTGAAACAACATGTTGTGGACCTGCAGTTGCAGCCACTCAACATTGTCCTTAGGAAAACCCTTGATCTTCTGCAGACCAAAGACCCTGGCGAGATCTTTGCTGAACCTGTTGATACTGATGAGGTTACAGACTATCTTGATGTTATTGATGAACCCATGGATTTCTCAACAATATCAAAGCGCATTGAAGACAATCACTACACAGCCATGGAGCAGTTTGAGCATGATTTCAACCTGATCATTAGCAACTGTCTGAGGTACAATGCACCAGACACCATCTACTACCGGGCAGCACTCAAACTGCGAGACCAGGGACGTCCCATTGTGCGTGCAGCCAGACGGCAGGTGGAACGTGCTGGTATTGACCCAGTCACTGGGCTACACACTGAGGAGCCTCCTACACTTGCTGACAGGGAGCCAACTGAGGAAGACTTTATCCTGACAGATGAACAGAGAAGAGACATGACACTGGAGGAACAATTGAAAGATTTACAGGAAAAACTGGACATGACTCAGGCTATAAAACATGGAGGTGTGAGAGCAACGCGAGTTAGAATGCTGCGTAAAGAGATCGCACTTGTCAGAAGGAAACTGAACCAGGAAAAGAGGCAACTTTCAGAATCGAGTGtttgcgGTCTGGAGGTATCTAGCCTCGGCGAGCCTTGTCTGTCACCGCTGGATGGCGAGCAACCACTGAAGAAGTTCAGACCCATTGACGAGAACGAAGCACTGAACGGCGACCCAATCCCGGCCAAGAGCTTGGACGCTGAAGACAATCGGTTAACAGGGGACAGCCTGTTGAACAGCAGGGCCACAGCGAACCCTAGTCCTGGAACCAGTCGACGAAGCGGCATCCTGTTCAATAAAGGAAGGCACCGAGCTAGACGGAACCTGTCAGCAGGGGCGGATAAGTTCCCGTTTGACATCTTATCTACGGCAAACCATGTGCTAAAAACGCCTGAGAATGACAGAACATTTGATCCAGTCAGCACTGAGTGTCAGGTTACGGAAAATCTACACACGGAGGAAGCTGGAGATGATGATGTGGTGTTTGAGGAGAGGCATCAGCCAGCGCCCAAAGAGGACAAGAAAGCACAGAAGCGGTCTTGTAATGACAGCGTGGGCAACAATGATACGTGTTATGTCCCGAAGAAGACTTACAAAACCGAGCTGGGCAAGTTGATCGAAGATGCAACAATGCTTCCCATGTTCGATTCACACTCGTCTGACAGAGTCAACAATCACTTCGCGTACACGAATGGGTTACGGCAGCGTTCGTATCGCTCGTACACCAGCGGTTCAGAATCGGATATCAGTGATATCCGAATGAACGGCACTCGTGCGTCCCGAGAACTCTGTCGGAAACTATCGGCGCTTTCCGAAGACGAACTTAGCACGACGGACACGGAAAACAGTTCAACTGATAATCGAGTGATGAATGGACCGGTGGATGGAAAGAGGAAGAAAAAGGCGGCACCAAGGCCTCGGAAAACAACGACTTCAGATTCAGAGATGGCCGACCTACCTCCTTTACAGCCATTGGATTTGGTTTGGGCGAAGTGCCGCGGATATCCTTCTTATCCAGCCTTGATCATAAATCCTCGAACAAAGAAAGGTTTCCTTCACCGTGGCGTGCCCATTCCTGTTCCCCCTGAGGATGTTTTGAAGGACCGGGCCATTACAGAAGAACATCTTTACCTTGTATTGTTCTTTGACACAAGACGAACTTGGCAATGGCTTCCTCGACACAAACTCGAACCTTTAGGGCAGAACGAAGAACGAGACGACAACAAGTTACAGGAGGGTCGCAAAACATCCATGAGAAAATCCGTGATGATGGCTTACCAGCGCGCTATTATCCACCGAGACCAAGTGGAGAGGGGTGGATCCCGAGACTCCGACGACGAAGACGACGAGGATTATGAGGAAGACAATGccgacgacgatgatgacgtAGATCGACGAGTGAATGAAAATGGCAACGAGGCTGAGGACGATGAAGAAAGCGATAACgacgatgatgacaatgatgagcATGACCCGCTGGAGGAAAATGGATTTGTATAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR051831 all species →	Family	Bromodomain-containing	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22881 all species →	BROMODOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_51312.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.