Gene detail

Detailed information of evm.model.contig_51525.1 in Platygyra sinensis

Genomic Location: contig_51525:6300...17859
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_51525.1

ATGTCAGGATTTCGCACGCAGTACACCAGATTGAATTCAAATTCAGACGATCCTGAAGAGGATTTACCTCCACAATATATTGCTGCCCGCGGATTTGAGGAGGTCGAGAAAGGCGGGATTAGGTCTGCAAGATCAGTATTTTGGATGTACGAAATAAAAGTGACTAAGAACAATGGATTTGTCTGTATTCTTCTGAATGAGATTTGTGAACTAATTCAATTTGTGTTTGTAGTCTTGTTTACATCATTCCTGGTTCTCTGTGTGGATTATGACACATTGTTTAACCACAAGAAACCTTCATTTTCCAATGTTGTGTACTTCCACAAAGTACAGCATATGGAACCCGCCATAGTTGTTTGCCTTGTCATAGCATTTATTTTCTGGTTGATTCGTGTGGCAAGAATTGTGATCCATTTCTTTAAGCTTCTGGAAATACGAGCATTTTATAAGAACGCCCTGAGGATATCAGAGAGTGAACTAACAAACCTTCAATGGCAGGATGTTCAGAAACGATTAATAGAAGTTCAGAAGGTTCATCAGATGTGCGTGCACAAGGAGGAACTGTCAGAACTTGATATCCATCATCGCATTCTAAGATGGAAAAACTACATGTTGGCCATGCAGAACAAGTCAGTTATTTCCTGCACATATACCTTTCCACTTGTTGGTGAAAGGGCATTTTTGACGGAGGGAATGAAGTACAACCTAAAAATGATTTTATTTTGGGGCCCAGGAAGTCCTTTCCAGAACAACTGGAAACTAAGAGAAGAATTTAGAAATCCAGCTAACAGATTTGTGTTGGCTAATCGGTTGTCTAGACGTATTTTCTGGATTGGAGTAGCAAACTTTGTACTTTCCCCTTTTATTATTATTTGGGTTATTTTATATTCATTCTTCACTTATGCAGAGATGGTGAGAAGAGAACCTGATACTTTTGGGGCACGCAAATGGTCCTCCTACGGCAGACTGTTTTTTCGACATTTTAATGAATTAGACCACGAACTACAAGCAAGATTAAGTAAAGCGTACGAACCAGCCTCCAAGTACATGAATCTTTTCGTCTCTCCGTTCATGGCTATCATAGCCAAGAACTTGGCCTTTTTTGCTGGAGCTTTGTTCGCTGTTTTGACGATATTTACGCTTCTGGACAGAGATGTTCTCTTGGCGGAACACGTGCTGACTGCCATAGCTGTACTAGCTATAAAAGGAGGAATATCTTTGAACGTAATGCTGTCCGCGAAATACAGGTACATGTACAGTACTGTACAGTACAAGAGTCAAAGAATGCCACCCAGAAACCGAATCTCTCTGGAACAACGCGAAAGGATTGTCCGCGCCTTTGAAGATGTCCATGAAGATTATTTGGCGATTGCTGAAACTATAGGAGTAAACAGATCGACTGCAAGAGGTATAGTTTCACGCTACGTCCGAGAAGGAAGAATAGCTGAAAGACCGCGAGGTGGCGCCAATCATGTACGAGTAGATGATGCCATGCGGGACTGTCTAAATGACATTATCAATGAAAATTGCCTTCTAACAATTGCCGAGATGAATCGCGAATTGAGACTACGCCTTCCACATAAGCCGGTAATTCACGACCGTACCGTAGCGAGAGCTCTCGAAGGAATGTTATATCGAGTGAAATTGGCAAGACCTCTGCCGGCTGATAGAAACCGCCCTGATGTCCTACAAAAACGAGTAGAATATGGAAACTGGTTCATGGGTCATGCAGTCGTAAATCACACTGTATTTATAGACGAGTGTGGCTACAATATTTGGACCGCACGAAGTCAAGGACGAGCTTTAAGAGGAGAGAGGGCCTATCGTCAAGTATGTGGTCAGCGAGGAAGAAATGTGACTGTGGCATTGGCAATTTCACCCACTAGTGGTCTAGTGTTTCACTCAGCAATACTCGGAGGCATGAATGGACGAAGATTTGATGATTTTCTCGCGCAGACAAGGCTAAATCTTGACCCCGATGAACACGTGATTTTTATTTATGATGGTGCGCCAGCCCACAGGAATCCTGCCATTCCCGGACCTAATTCAGAATTAAGAAAATTGCCACCTTACAGTCCCTTTCTCAATATTGTTGAACAAGCTGTTAGTGCCTTGAAAGCTGCAATAAAGGCGGATATAAGTCGTCCTGAAATTCAAGTACAGATGAACGACCGCGCTGAAGCCAGACGTCAAGGACTTGCCTTGGGAAATTACCGCACGCAGTTGTTACTTCAAGCACTACAGAGGAATATTGGTACCATCACTGTCGCCAAATGTGGACAGTGGTTCAGGTTTATGCAGACGTACTTACCAAGATGCATCAATAACGAAGCAATCGAAGGATAA

Transcript

evm.model.contig_51525.1

ATGTCAGGATTTCGCACGCAGTACACCAGATTGAATTCAAATTCAGACGATCCTGAAGAGGATTTACCTCCACAATATATTGCTGCCCGCGGATTTGAGGAGGTCGAGAAAGGCGGGATTAGGTCTGCAAGATCAGTATTTTGGATGTACGAAATAAAAGTGACTAAGAACAATGGATTTGTCTGTATTCTTCTGAATGAGATTTGTGAACTAATTCAATTTGTGTTTGTAGTCTTGTTTACATCATTCCTGGTTCTCTGTGTGGATTATGACACATTGTTTAACCACAAGAAACCTTCATTTTCCAATGTTGTGTACTTCCACAAAGTACAGCATATGGAACCCGCCATAGTTGTTTGCCTTGTCATAGCATTTATTTTCTGGTTGATTCGTGTGGCAAGAATTGTGATCCATTTCTTTAAGCTTCTGGAAATACGAGCATTTTATAAGAACGCCCTGAGGATATCAGAGAGTGAACTAACAAACCTTCAATGGCAGGATGTTCAGAAACGATTAATAGAAGTTCAGAAGGTTCATCAGATGTGCGTGCACAAGGAGGAACTGTCAGAACTTGaTATCCATCATCGCATTCTAAGATGGAAAAACTACATGTTGGCCATGCAGAACAAGTCAGTTATTTCCTGCACATATACCTTTCCACTTGTTGGTGAAAGgGCATTTTTGACGGAGGGAATGAAGTACAACctaaaaatgattttattttgGGGCCCAGGAAGTCCTTTCCAGAACAACTGGAAACTAAGAGAAGAATTTAGAAATCCAGCTAACAGATTTGTGTTGGCTAATCGGTTGTCTAGACGTATTTTCTGGATTGGAGTAGCAAACTTTGTACTTTccccttttattattatttgggTTATTTTATATTCATTCTTCACTTATGCAGAGaTGGTGAGAAGAGAACCTGATACTTTTGGGGCACGCAAATGGTCCTCCTACGGCAGACTGTTTTTTCGACATTTTAATGAATTAGACCACGAACTACAAGCAAGattaagtAAAGCGTACGAACCAGCCTCCAAGTACATGAATCTTTTCGTCTCTCCGTTCATGGCTATCATAGCCAAGAACTTGGCCTTTTTTGCTGGAGCTTTGTTCGCTGTTTTGACGATATTTACGCTTCTGGACAGAGATGTTCTCTTGGCGGAACACGTGCTGACTGCCATAGCTGTACTAGCTATAAAAGGAGGAATATCTTTGAACGTAATGCTGTCCGCGaaatacaggtacatgtacagtactgtacagtacaagAGTCAAAGAATGCCACCCAGAAACCGAATCTCTCTGGAACAACGCGAAAGGATTGTCCGCGCCTTTGAAGATGTCCATGAAGATTATTTGGCGATTGCTGAAACTATAGGAGTAAACAGATCGACTGCAAGAGGTATAGTTTCACGCTACGTCCGAGAAGGAAGAATAGCTGAAAGACCGCGAGGTGGCGCCAATCATGTACGAGTAGATGATGCCATGCGGGACTGTCTAAATGACATTATCAATGAAAATTGCCTTCTAACAATTGCCGAGATGAATCGCGAATTGAGACTACGCCTTCCACATAAGCCGGTAATTCACGACCGTACCGTAGCGAGAGCTCTCGAAGGAATGTTATATCGAGTGAAATTGGCAAGACCTCTGCCGGCTGATAGAAACCGCCCTGATGTCCTACAAAAACGAGTAGAATATGGAAACTGGTTCATGGGTCATGCAGTCGTAAATCACACTGTATTtatagacgagtgtggctacaatATTTGGACCGCACGAAGTCAAGGACGAGCTTTAAGAGGAGAGAGGGCCTATCGTCAAGTATGTGGTCAGCGAGGAAGAAATGTGACTGTGGCATTGGCAATTTCACCCACTAGTGGTCTAGTGTTTCACTCAGCAATACTCGGAGGCATGAATGGACGaagatttgatgattttctcgcGCAGACAAGGCTAAATCTTGACCCCGATGAACAcgtgatttttatttatgatgGTGCGCCAGCCCACAGGAATCCTGCCATTCCCGGACCTAattcagaattaagaaaattgccACCTTACAGTCCCTTTCTCAATATTGTTGAACAAGCTGTTAGTGCCTTGAAAGCTGCAATAAAGGCGGATATAAGTCGTCCTGAAATTCAAGTACAGATGAACGACCGCGCTGAAGCCAGACGTCAAGGACTTGCCTTGGGAAATTACCGCACGCAGTTGTTACTTCAAGCACTACAGAGGAATATTGGTACCATCACTGTCGCCAAATGTGGACAGTGGTTCAGGTTTATGCAGACGTACTTACCAAGATGCATCAATAACGAAGCAATCGAAGGATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04109 all species →	ATG9	Autophagy protein ATG9	Family	Interproscan
PF13358 all species →	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR007241 all species →	Family	Autophagy-related protein 9	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR038717 all species →	Domain	Tc1-like transposase, DDE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13038 all species →	APG9 AUTOPHAGY 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0034497 all species →	Biological Process	protein localization to phagophore assembly site	Interproscan
GO:0044805 all species →	Biological Process	obsolete late nucleophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02021	ABC.MR; putative ABC transport system ATP-binding protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.