Gene detail

Detailed information of evm.model.contig_51578.1 in Platygyra sinensis

Genomic Location: contig_51578:8248...25812
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_51578.1

ATGGAAAGTGAATTGTCTTGGCAACAAAAGAAAGATTTTGCGAAAAACCCAGGATATCTCCCACCTTCCAAGTTAATAAGTCTGCAACGTCAAAGTAATGGATTTGGATTCACTTTAAGGCATTTTGTTGTTTACCCTCCAGAGCTAATAAGGAAAACAAGTGAGCCTGGTCCAGGACCCGGTATAAATGGTCTTGACCATCATGTTGATGACATTGAAAGACAAAAGGCGGAGCCCATGGACACTGTGTTTGTGCGGCAAGTGGCACCCAGTGGACCAGCAGACAGGGCAGGGCTTTCGACAGGAGACCAGATTGTTTCTGTTAATGGCCAACCAGTAATGGGAAAGTCCTATTCACAAGTGATTGAACTTATTTTATCAAGCCACGAACTGCTGGAGTTGGGTATTATTCCTAAAGAAGACTGTGTTCTTCAGATGGTAACTCCTGCACTTTCCATTCCTCCAAGCATTTCTGTTGGTACCCATGAAATTAGCCAGTCTCCTCCACCTGTCAAACCTAAACCAATGTTTAGACGACTGTCAAGCCATGACAGCCCAGCAAGGGTCATGTCAACAATGACAATAAACCCTGCAAACTCGTATCATTTGAAAATGTCGGACAAAGCTTCTCAGAGTTCGGCAGCCCATGGCAATGACACTTCTACTCCAGTTGTTACACTAAGGCGTGGCTCTGTGGACAGAACTGCTATGGAGAACAGGAGTTTTGTTATTACCTCTGAGAGTATGGACTGTAACAGCAATTTGAAGTCAAGAAGTTCTAGCACCCTGGAAAGTAGTGCTGTAAATTCACCCCGGATGGATGGCTCTTATTTTATGGCTGCAACTGATTCTACAGGAAGACCGCTTGCACTTCGATTTGAGAAAGGTTCAAAAGTGGGTAACACACTGACAGTGTTGGAAGATTCCAGAACAAAGACTCGTTCTCATTCTCTACCAGTGGTAGAAATGCAGGGATTTGACGAGCGAAACAGAGCCAGTAGCAATTTATCTGATGCAGACAGAGTTAATTCCATGAACTTAAATTATGGATATAAATCAAATGACAAGGGCCATGGGTCGGTTAGTACCCCACCGTTCATGCTATCAGCTCCTAGAACAGTAGCCTCTGATAGCCCCTCAACAACGTACATGAACACAAGCGCAGACATGGGATCTCGTCAACCTGTGGCAGCTGATCCAGGCTACAACAAGAAAGGACGAACATCACATGAGGAAACTACATCTTACCTTATAAGAACAATTGCCTCTCACATGAATAAAGATCGTCAGGGAGGTTTAAAGTCCTCCACTGTGGGGACAACACTACTTGAGAGCAAAGAAGGACAGCCTTATAGACAGATTGGTGGTAGTGAAAGATCAACAGCGCCAGATTCAAATGCTGAACTTTACAAAGACACAGATTCTCCACATCCAGCAAAAGTACCACGTCAAAGTGAGGACCAAGTGAAGCAAGCAGCCTATTCAAGCCAAGTGTCTGTATTCCCAAACAAACCAGTTTTTGATGAAATGCATTTCACACCCACAGTTGGAGCCAATGAGGTGGAGTCTTCTGCCGTAAACAAACAAGGCAGCCCAAAGCCACGACGCGTGTCATACCTGATGGCAACCTCTCGAGGGAGCTCATCCTTGTCAGACCAGAAAGTCTGGTCAACTGCTCCTCAAGGCAAAAAGCCTGGCAAATCATCCTTGTTTGAAGCACTTTCTACCATGCTTCCACCAGTTATGGTGCATGTTTCATCTGGGATGGAGCTCTGTGAAGATGTCAATGGAGAAGAGGGCATGGAGATACCAACCAATGAACAGGAGGAAGAGGTATTCTCAGTCTCAGCTGATGAGAAGTCTGGTACTGATACTACATTGCAGCGCTCAAACCGACGTATCTCATATGTGATGGCGACGTCATCGCCATCATCACCCAGACATGAAGCATCACTGGAGGCTACAAAAGAGGAAGAGGAACATAAAGAGAGGAGCGAACAAATTCCTGGCATGTCAGAAGTGTGCAAAGAAGGTCTTCTTTGGAGAAAAGTGGCTGTAATGGATGGGGGGAAGCGTTCCAGTGCACGGTCTTGGAAGCCTGTGTTTGCTGTTCTGCGTGGCCATGTTCTTTACTTACATAAAGACAAAGGAATGGCCCATCAAGAGGATAGCTCTGATGAACAGCCAATCAGCATCAAGTCTAGCATTGTTGACATCGCTCATGACTACACTAAAAGGAAGAATGTGTTCAGAATGACCACATTTAATGGATCAGAGTTCTTGTTCCAGCACAAGGTCGCCAGATGTGGTATTGAAAATTTCGAGTTTATTGTCAGTGAACAAGAGCAGACTGAGGATCATGACTCCATGATGTCATGGATTGCAGCCATCCAGGCCAACAACAACCCTGATGAAGATGAGAATGGTGTGAGTAGTCAGAGTCTGATTATAAGAAGAATGAAAACAGTGGAACAAGAGACATTAGGCATAACAGTTTTGTCTACTGTGGATGTGACTGGCTGGATGCGAGCAGCTGAAGAAACTGAAGCAAGATCAAATACTGCTTCACCCAGTCACAAGTTATCACCTCCAGTCAACACCAAGATAACTGGTATTCCTGGAATATCAAACATCAAGAAAAGCTTGTCTTTTAAGAACATCACTGCTGGGCAAAAAGGCGAGAGTGGCAAGACACATGGCAATAAAGCATCAAAAAAGAGGAAGAAACCTCAACACCCTAATAGCTATCCTTCAGATCAATCCTTAGATGATGATGTTCTCCCCGCTCTATCACAACCTGGGGGCTACTTAAGGAAGTTTAGCATGGGGAGGCTCTGCCCCGATGTTCAACCCCTTACCCTTTCATATTTGTGGCAGAAAAGGACATTCTGTTGGAGTACCTTTGAGCTGTGCCCAGCATCCAAGCACAACAAGGTGGGTCGTATCCTAATTGGAGGAAAAGCCATTATTCTACAAGCCTTTATTCCAAGCTCAGGTCATTTCGATTAA

Transcript

evm.model.contig_51578.1

ATGGAAAGTGAATTGTCTTGGCAACAAAAGAAAGATTTTGCGAAAAACCCAGGATATCTCCCACCTTCCAAGTTAATAAGTCTGCAACGTCAAAGTAATGGATTTGGATTCACTTTAAGGCATTTTGTTGTTTACCCTCCAGAGCTAATAAGGAAAACAAGTGAGcCTGGTCCAGGACCCGGTATAAATGGTCTTGACCATCATGTTGATGACATTGAAAGACAAAAGGCGGAGCCCATGGACACTGTGTTTGTGCGGCAAGTGGCACCCAGTGGACCAGCAGACAGGGCAGGGCTTTCGACAGGAGACCAGATTGTTTCTGTTAATGGCCAACCAGTAATGGGAAAGTCCTATTCACAAGTGATTGAACTTATTTTATCAAGCCACGAACTGCTGGAGTTGGGTATTATTCCTAAAGAAGACTGTGTTCTTCAGATGgtAACTCCTGCACTTTCCATTCCTCCAAGCATTTCTGTTGGTACCCATGAAATTAGCCAGTCTCCTCCACCTGTCAAACCTAAACCAATGTTTAGACGACTGTCAAGCCATGACAGCCCAGCAAGGGTCATGTCAACAATGACAATAAACCCTGCAAACTCGTATCATTTGAAAATGTCGGACAAAGCTTCTCAGAGTTCGGCAGCCCATGGCAATGACACTTCTACTCCAGTTGTTACACTAAGGCGTGGCTCTGTGGACAGAACTGCTATGGAGAACAGGAGTTTTGTTATTACCTCTGAGAGTATGGACTGTAACAGCAATTTGAAGTCAAGAAGTTCTAGCACCCTGGAAAGTAGTGCTGTAAATTCACCCCGGATGGATGGCTCTTATTTTATGGCTGCAACTGATTCTACAGGAAGACCGCTTGCACTTCGATTTGAGAAAGGTTCAAAAGTGGGTAACACACTGACAGTGTTGGAAGATTCCAGAACAAAGACTCGTTCTCATTCTCTACCAGTGGTAGAAATGCAGGGATTTGACGAGCGAAACAGAGCCAGTAGCAATTTATCTGATGCAGACAGAGTTAATTCCATGAACTTAAATTATGGATATAAATCAAATGACAAGGGCCATGGGTCGGTTAGTACCCCACCGTTCATGCTATCAGCTCCTAGAACAGTAGCCTCTGATAGCCCCTCAACAACGTACATGAACACAAGCGCAGACATGGGATCTCGTCAACCTGTGGCAGCTGATCCAGGCTACAACAAGAAAGGACGAACATCACATGAGGAAACTACATCTTACCTTATAAGAACAATTGCCTCTCACATGAATAAAGATCGTCAGGGAGGTTTAAAGTCCTCCACTGTGGGGACAACACTACTTGAGAGCAAAGAAGGACAGCCTTATAGACAGATTGGTGGTAGTGAAAGATCAACAGCGCCAGATTCAAATGCTGAACTTTACAAAGACACAGATTCTCCACATCCAGCAAAAGTACCACGTCAAAGTGAGGACCAAGTGAAGCAAGCAGCCTATTCAAGCCAAGTGTCTGTATTCCCAAACAAACCAGTTTTTGATGAAATGCATTTCACACCCACAGTTGGAGCCAATGAGGTGGAGTCTTCTGCCGTAAACAAACAAGGCAGCCCAAAGCCACGACGCGTGTCATACCTGATGGCAACCTCTCGAGGGAGCTCATCCTTGTCAGACCAGAAAGTCTGGTCAACTGCTCCTCAAGGCAAAAAGCCTGGCAAATCATCCTTGTTTGAAGCACTTTCTACCATGCTTCCACCAGTTATGGTGCATGTTTCATCTGGGATGGAGCTCTGTGAAGATGTCAATGGAGAAGAGGGCATGGAGATACCAACCAATGAACAGGAGGAAGAGGTATTCTCAGTCTCAGCTGATGAGAAGTCTGGTACTGATACTACATTGCAGCGCTCAAACCGACGTATCTCATATGTGATGGCGACGTCATCGCCATCATCACCCAGACATGAAGCATCACTGGAGGCTACAAAAGAGGAAGAGGAACATAAAGAGAGGAGCGAACAAATTCCTGGCATGTCAGAAGTGTGCAAAGAAGGTCTTCTTTGGAGAAAAGTGGCTGTAATGGATGGGGGGAAGCGTTCCAGTGCACGGTCTTGGAAGCCTGTGTTTGCTGTTCTGCGTGGCCATGTTCTTTACTTACATAAAGACAAAGGAATGGCCCATCAAGAGGATAGCTCTGATGaacagccaatcagcatcaagtctAGCATTGTTGACATCGCTCATGACTACACTAAAAGGAAGAATGTGTTCAGAATGACCACATTTAATGGATCAGAGTTCTTGTTCCAGCACAAGGTCGCCAGAtgtggtattgaaaatttcgagtttatTGTCAGTGAACAAGAGCAGACTGAGGATCATGACTCCATGATGTCATGGATTGCAGCCATCCAGGCCAACAACAACCCTGATGAAGATGAGAATGGTGTGAGTAGTCAGAGTCTGATTATAAGAAGAATGAAAACAGTGGAACAAGAGACATTAGGCATAACAGTTTTGTCTACTGTGGATGTGACTGGCTGGATGCGAGCAGCTGAAGAAACTGAAGCAAGATCAAATACTGCTTCACCCAGTCACAAGTTATCACCTCCAGTCAACACCAAGATAACTGGTATTCCTGGAATATCAAACATCAAGAAAAGCTTGTCTTTTAAGAACATCACTGCTGGGCAAAAAGgCGAGAGTGGCAAGACACATGGCAATAAAGCATCAAAAAAGAGGAAGAAACCTCAACACCCTAATAGCTATCCTTCAGATCAATCCTTAGATGATGATGTTCTCCCCGCTCTATCACAACCTGGGGGCTACTTAAGGAAGTTTAGcatggggaggctctgccccgatgttcaaccccttaccctttcatatttgtggcagaaaagGACATTCTGTTGGAGTACCTTTGAGCTGTGCCCAGCATCCAAGCACAACAAGGTGGGTCGTATCCTAATTGGAGGAAAAGCCATTATTCTACAAGCCTTTATTCCAAGCTCAGGTCATTTCGATTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17820 all species →	PDZ_6	PDZ domain	Domain	Interproscan
PF15410 all species →	PH_9	Pleckstrin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041489 all species →	Domain	PDZ domain 6	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR041681 all species →	Domain	Pleckstrin homology domain 9	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR001605 all species →	Domain	Pleckstrin homology domain, spectrin-type	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23175 all species →	PDZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_51578.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.