Gene detail

Detailed information of evm.model.contig_51722.2 in Platygyra sinensis

Genomic Location: contig_51722:8729...22610
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_51722.2

ATGGCTGGAGTAAAGATGTATTCAATGGTATTTCTACTGGTGTTGGCTTCAAAGATCAGCTTTCAAGACATAGTTGATCACAGAGGAACAGAGTTTGTGATTAGTTTCATGCCGCAACCTGGACGACCACCCAAGAACATGGGCGGAACAAATAACCTTTACATTTCCAGCTTTGAGGACGTTCAAGCTCGTGTCCATATTCCCGCCCACCCGCAACAGGCCGACACACAGTTTGACTTAAAAGCTGGAGGAATTAAAATAATTTCGCTACCCGGAAGTACGCGGACAATGGGGTCCACTGGGATCGAGAAAAACAAAGGTATACGGATTACTGCGAATAAACCCATGTCAGTGCAAGGACTGTCAATCGTGAGTAAGACTAGCGAAGGGTTTCTTGGGCTGCCTGTGGAGGCGCTTGGAATGTACTACATTGTGCCGACCTATTTTCCGGCAAGTAGCGCTATCGTGCAGGTCGTAGCAACGGACGATAACACTCTTGTATCTTTTAAGCTACGGCTTCCAAAGAATGGTAGAGTGCATTATGGAGAGGTGAAGTATGTAAACGGTGAATTCATCAACGCTACTTTGAACGCGTTGGATGTATTTCAAGTGCTGGGCGATTCTGATCTAAGCGGTACTATTGTGACGTCATCGAAACCAATCGCTGTTTTTTCTGGTGATGATTGTGCCATGGTGCCACAGCAACAACATCCATGCAATCACTTAGTGGAACAGATTCCCCCTGTTAGCGACTGGGGGCAAGAGTTCATGACTAACCCCACACCTAACGGTAAGGAGGGAGATGAATTTCATGTCATAGCGTCAATGAAAAATACGCTTGTCTATGTTGACACGCAGTTAAAAGACACACTAAACGAGGGAGGCAAATATATTATTGATGCTCCGTGGAATGTGTCTTTAGTCATTTCGACGTCTCAACCCAGTCTTGTTGTACAATACTCCAAAAGAAGCGACACACTCAAGTTGAGGCCAGCGATGACTTTAGTGCCCCCCAAAGAATGGTACTCAAATGATTACACAGTTTATGTTCCCAAAGACGATACCGGCAACGCGTTTGATAGTTACATAAATGTTGTCATAGATACCAGTTGGCGAAATGATCTTCGTGTAAAAGGCGCGGATGATCTCAGCATCGACTGGAAAATTATTTCCGGAGGTTTTTCTAGAGCTTCTCTTCATCTAGCCAGTGCTGGTATGTACCATGTTTATCACAAGAATCCACTGGCTAATTTTTCAGCTGTTCTGTACGGCATGGCCTCTCAAAAGCTGTTTTCCTTTCCAGTCGGCATGAAATGGCTACAGCCGTTTGATTTTGACTGTTCACCAACGAACACGACAGGCGGCGATAAAATCGATAACGACTGCGATGACGCCACGGACGAGGAATTAGCCAATGGCCGAGACGATGATGGTGATGGTCGCATCGACGAAGATCTTGTCACGCCAGAGCCTGACTTTGAAGTACCGAGGGATTTCATGACAACGCCTTTGCTTTCCTGTGACGGGTCATTAACTGTAGCCAGCACAGGGAATACAGGCGTTGCAACCGGCTCGGCACAAGGCGTTTGTAACATACGCGGTGGAAAGACAGTCATCTCCGCGAAGCCGGACAATATCGTGAGTTTCCAAAGTTGTGAGCGTGTGTTGGAGCGGCTGTGGACTATTGTAGACCCCTGTAAAAATGAACTTTCGCTTAGCCAGCGTATAAAGATAAGCACACCGCAGGATCCAGTAATCACTTTTCCAGTCGACACGGCTTTCACCTGCAGGGGTAAGAAATATCTTGCGCCACGGTTTACTGGAGACGTTCAATTGACTTCAAAAGAAGGGAGCTTATGTCCAAGGAACGTGACAGTCACTCACCGCGACTCCTACAGTGGCGACTGTCCGGACGAGGAGGGGAGACTGGATCGAGTGTGGACAGTTGAAGACAAGTGTACACGAAGTAGAAAAGATAGACAGGTCATCAAGCTTTTGCCAAAAGAATCCAGAAGAACAACTAACTTCGTAGTGTCATTCAGGGTAACAAGCGAGACATTTTCGGCAAAACTTGAAGACAAGACATCCCCATCATTCAAATCTTTGTCGGACAGTTTGGAACTCGAGTTAGAGGAAACATTCACTCAATCAAAGTCAAACTTTGGACGATTCTTTGTAGCAGCTACGACACTAGCTTTCAGCAATGGTAGTGTTGTACCGAGCATTCTCATTAAGATAGACGCGAAGGCTCAAATCGATCAGCGGCAGCTGGTTGCCTTCATGAACACCACACTGAAAAGTGGCGCTTTGGGAAAATATCAAGTGGATCCCAGCTCAGTTCAATCCACAGACTTTGATGAATGTCAAGCATCTGATCTCAATGATTGCCACGAGAAAGCAAAATGCACCAACACTCTAGGCTCATATAACTGTACTTGTCTTGATGGATATTTTGGTGATGGCATCCTCTGTCAAGCCCCACCTTCAATCTACTACGTTGATCCACCAACCGAAAGTGGCATTGAAGAAAACGTGACACTCACATGTCACGCAAGTGGCCTTCCACAACCAACATTCTCTTGGATAACACCCGATGGTCACGCTGTAAACGCGACAGCTCCAGCTTATGAAAGTAAAATCCTTGATGATGGTAGCGAAAACAGAAGAGGGAAAATTGTTCAAGAGGACGGTTCACTCTTGATCTTTAACACCCGTGTTGTTGACCAAGGTGTTTACAAATGTGTGGCAATCAATGTCATGGGGGAGGACAGAAAGAGTGTTAACCTTACAGTGAAAGAAGACCTGATAGGAGTCGATGTCGCTATTACCATCGAGGACCAAGTGTTTGACAAAGATTTGGAAAACAAGTCTTCAACAAGATACAAAACAATAGAAAAGCAAGTTGAAAAAGAGTTAACTGAATTGTTCCAAGACATTGAAGGATTCGAAAAAGTTGTGATTCTTGGATTCTATAATGGAAGCGTCAAGGTACGTTTTCGAGTTGTTGTAAAAGTAGAAAAAAATGAAGACAAAGAACCTGCGGCAATCGCCAACAAAGTTGGTAAAACACTTAGAAATAGTGTGGAAACTGGTAAAATAGGCAACCTCAAAGTCAAGAAAACTGTTGAGTTGAGAGGTTTGTATTGTGGTTTTGATGTTTCGCTCGTTCATTGGTTGATTGAATCGTTCGTTTATTGA

Transcript

evm.model.contig_51722.2

ATGGCTGGAGTAAAGATGTATTCAATGGTATTTCTACTGGTGTTGGCTTCAAAGATCAGCTTTCAAGACATAGTTGATCACAGAGGAACAGAGTTTGTGATTAGTTTCATGCCGCAACCTGGACGACCACCCAAGAACATGGGCGGAACAAATAACCTTTACATTTCCAGCTTTGAGGACGTTCAAGCTCGTGTCCATATTCCCGCCCACCCGCAACAGGCCGACACACAGTTTGACTTAAAAGCTGGAGGAATTAAAATAATTTCGCTACCCGGAAGTACGCGGACAATGGGGTCCACTGGGATCGAGAAAAACAAAGGTATACGGATTACTGCGAATAAACCCATGTCAGTGCAAGGACTGTCAATCGTGAGTAAGACTAGCGAAGGGTttcttgggctgcctgtggagGCGCTTGGAATGTACTACATTGTGCCGACCTATTTTCCGGCAAGTAGCGCTATCGTGCAGGTCGTAGCAACGGACGATAACACTCTTGTATCTTTTAAGCTACGGCTTCCAAAGAATGGTAGAGTGCATTATGGAGAGGTGAAGTATGTAAACGGTGAATTCATCAACGCTACTTTGAACGCGTTGGATGTATTTCAAGTGCTGGGCGATTCTGATCTAAGCGGTactattgtgacgtcatcgaaACCAATCGCTGTTTTTTCTGGTGATGATTGTGCCATGGTGCCACAGCAACAACATCCATGCAATCACTTAGTGGAACAGATTCCCCCTGTTAGCGACTGGGGGCAAGAGTTCATGACTAACCCCACACCTAACGGTAAGGAGGGAGATGAATTTCATGTCATAGCGTCAATGAAAAATACGCTTGTCTATGTTGACACGCAGTTAAAAGACACACTAAACGAGGGAGGCAAATATATTATTGATGCTCCGTGGAATGTGTCTTTAGTCATTTCGACGTCTCAACCCAGTCTTGTTGTACAATACTCCAAAAGAAGCGACACACTCAAGTTGAGGCCAGCGATGACTTTAGTGCCCCCCAAAGAATGGTACTCAAATGATTACACAGTTTATGTTCCCAAAGACGATACCGGCAACGCGTTTGATAGTTACATAAATGTTGTCATAGATACCAGTTGGCGAAATGATCTTCGTGTAAAAGGCGCGGATGATCTCAGCatcgactggaaaattattTCCGGAGGTTTTTCTAGAGCTTCTCTTCATCTAGCCAGTGCTGGTATGTACCATGTTTATCACAAGAATCCACTGGCTAATTTTTCAGCTGTTCTGTACGGCATGGCCTCTCAAAAGCTGTTTTCCTTTCCAGTCGGCATGAAATGGCTACAGCCGTTTGATTTTGACTGTTCACCAACGAACACGACAGGCGGCGATAAAATCGATAACGACTGCGATGACGCCACGGACGAGGAATTAGCCAATGGCCGAGACGATGATGGTGATGGTCGCATCGACGAAGATCTTGTCACGCCAGAGCCTGACTTTGAAGTACCGAGGGATTTCATGACAACGCCTTTGCTTTCCTGTGACGGGTCATTAACTGTAGCCAGCACAGGGAATACAGGCGTTGCAACCGGCTCGGCACAAGGCGTTTGTAACATACGCGGTGGAAAGACAGTCATCTCCGCGAAGCCGGACAATATCGTGAGTTTCCAAAGTTGTGAGCGTGTGTTGGAGCGGCTGTGGACTATTGTAGACCCCTGTAAAAATGAACTTTCGCTTAGCCAGCGTATAAAGATAAGCACACCGCAGGATCCAGTAATCACTTTTCCAGTCGACACGGCTTTCACCTGCAGGGGTAAGAAATATCTTGCGCCACGGTTTACTGGAGACGTTCAATTGACTTCAAAAGAAGGGAGCTTATGTCCAAGGAACGTGACAGTCACTCACCGCGACTCCTACAGTGGCGACTGTCCGGACGAGGAGGGGAGACTGGATCGAGTGTGGACAGTTGAAGACAAGTGTACACGAAGTAGAAAAGATAGACAGGTCATCAAGCTTTTGCCAAAAGAATCCAGAAGAACAACTAACTTCGTAGTGTCATTCAGGGTAACAAGCGAGACATTTTCGGCAAAACTTGAAGACAAGACATCCCCATCATTCAAATCTTTGTCGGACAGTTTGGAACTCGAGTTAGAGGAAACATTCACTCAATCAAAGTCAAACTTTGGACGATTCTTTGTAGCAGCTACGACACTAGCTTTCAGCAATGGTAGTGTTGTACCGAGCATTCTCATTAAGATAGACGCGAAGGCTCAAATCGATCAGCGGCAGCTGGTTGCCTTCATGAACACCACACTGAAAAGTGGCGCTTTGGGAAAATATCAAGTGGATCCCAGCTCAGTTCAATCCACAGACTTTGATGAATGTCAAGCATCTGATCTCAATGATTGCCACGAGAAAGCAAAATGCACCAACACTCTAGGCTCATATAACTGTACTTGTCTTGATGGATATTTTGGTGATGGCATCCTCTGTCAAGCCCCACCTTCAATCTACTACGTTGATCCACCAACCGAAAGTGGCATTGAAGAAAACGTGACACTCACATGTCACGCAAGTGGCCTTCCACAACCAACATTCTCTTGGATAACACCCGATGGTCACGCTGTAAACGCGACAGCTCCAGCTTATGAAAGTAAAATCCTTGATGATGGTAGCGAAAACAGAAGAGGGAAAATTGTTCAAGAGGACGGTTCACTCTTGATCTTTAACACCCGTGTTGTTGACCAAGGTGTTTACAAATGTGTGGCAATCAATGTCATGGGGGAGGACAGAAAGAGTGTTAACCTTACAGTGAAAGAAGACCTGATAGGAGTCGATGTCGCTATTACCATCGAGGACCAAGTGTTTGACAAAGATTTGGAAAACAAGTCTTCAACAAGAtacaaaacaatagaaaagcaAGTTGAAAAAGAGTTAACTGAATTGTTCCAAGACATTGAAGGATTCGAAAAAGTTGTGATTCTTGGATTCTAtaatgGAAGCGTCAAGGTACGTTTTCGAGTTGTTgtaaaagtagaaaaaaatgaagacaAAGAACCTGCGGCAATCGCCAACAAAGTTGGTAAAACACTTAGAAATAGTGTGGAAACTGGTAAAATAGGCAACCTCAAAGTCAAGAAAACTGTTGAGTTGAGAGGTTTGTATTGTGGTTTTGATGTTTCGCTCGTTCATTGGTTGATTGAATCGTTCGTTTATTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF17517 all species →	IgGFc_binding	IgGFc binding protein	Family	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR013106 all species →	Domain	Immunoglobulin V-set domain	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR035234 all species →	Domain	IgGFc-binding protein, N-terminal	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46534 all species →	IGGFC_BINDING DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_51722.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.