Gene detail

Detailed information of evm.model.contig_52000.3 in Platygyra sinensis

Genomic Location: contig_52000:47111...63040
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_52000.3

ATGGCGGCCTTTCGCGACGAGCGCGTTAGGGACAAAAAAGGCTGTTTTCGCCGTGTAAAAGAATGCGAACGTCGACAGAATTTGCAGATCCAATGCAAACGGAAATTTGAGAAAGTGGGTGAAGATGTTGAGAACGGTAATGGCCGTAGAAGTGATTTTGAGCTGTCGGGAAGACGCGTTGTTGAGTTGGATTTGTTGGCGAAAGTACTAGATGAAGGCTGTAAAGCCTGCGGGAATCCGCTTCAGCTCTCGAACTGTTTTCATGAAACAGTTTCCGGACTCGGAAGCCTCTTGTACCTAACTTGTGCAAACGGTGAATGTGGAGAAATAAACGTGTGTAGAACTAACAAGACTCATCGGACCGGAAGCCTTCAGCGAGGGAGGCCCATATTTGATGTCAACACAAAGCTTGCAGCAGTTCCTTCACAAGCTCCCAGTGGTTTTACAGTAGCTGCAAGTACATCTACCAGTATCACAGCATCCTGGCAGTTACCACCAGAAAATTCCAGACATGGAAACATAACAGGATTTAAACTGTTCTACAAAGAGAAAGACTCTGTAGGGTCACCATTTGATATAACTATAAATGATGGAGGAAGTTACACTAAAGACATCATGGGGCTTTCAATATATACAGAATATGAATTTCAAGTGTTGGCATTTACTTCTAAAGGTGATGGACCAAAGAGTTCAGTGGTGGTTGAAAGAACAATGGAAGATGCACCAGATGTTCCTGCTGCCCTCAATCATTCTATTATAGCACCAGACAAGTCTCACGGCCCAAAATTCTCTGTCAGAGCTGTGACTATCAAACCTGGAGAAAATGTTACTTTAACTGTAGATATCCCAGAGTATGAATTTAATGGTAGTAGTGAATTAAAACGGATTCTCGCAAGAGAAATTAATCTCAGGAAAGCCGTTAATCAACTCTTCTGGATTTGCATTAAGTACAATGTGTCTGTTAGAGCTTACACTAAAGCAGGCCCTGGACCCTATAGTCAACCTATGATATTGCAAACATCAAGGCCAGAATCTCTCTGGGATCTGAAGGAAAAAAATTCTGGAACAACAGAAGTCACACTGGAGTGGAAAAAACCAAATGTTACCACAAGGGAAAAGACCAGTTACACAGTTAGGTACAGTGGAACAAAGTCTTACAATAACAGTTTTAAACACGAGGGCTTAAAAGAAAAAATAAAGGCAACAACATATTCCGTGAAGAATCTAGTGCCAGGCTCTCACTATGATTTCGAGGTTTATGCAACCTCTGTTTGTGGCAGTAGTTCATCTTCAAATGTGGAAGTGGAAACAATAATAGAAGCTCCAATTGCACCAGTTGTAGTTAATTTGACCGATGTGACTGTCACCGAGTCAGTCGCTGAAATTTATCTCTGGCCTGTGGAACAAAGGAATGGTCCAATAAGTGCTTATCAAGTTATAGTTCTAAAAGTTGTTGATGGAATGAAAGAACTTCCAGATGATTATGATTCAAAACTGAAAGATTCAAACAACACCAACAAAGATAACTTGAACTTTTACATCGCTGCTGAGATACCAAATGTTCCAGTTTACGAGGAATCTTGGGAACTTACTATCGGTGATGGGAAAACGTATGGATCTTATGTTAATAAAGGACTGAAGAGTGGAGAAGATTACGTCGTCTATCAACGAGCTGTCACACATGACAAGGACCTGATTTTAGAAGGAGGTGTCAGCAAAGTAGCCCTTGTTTCTGTCACTGAAGAAGGCAAGATGAAGCCTTCTATCAAAGACCTGCCAGAGAAAACCATTCTAGCGGTTGACGATCTGGCAATATTAACATGTGAGGTCAGTGGAGATCCAGAACCGTCTGTTACGTGGAGTAAAGATGGAAACACTAACATACCGCGAGCTCAGTTTAGGAACGATGGACGTATTCTTGCTATCAAAGATGTTTTGCCCATTGACAGCGGTGTCTATGAATGCAAAGCATCCAACAAGTTAGGAGAAAGTCGTTCGTCTACATTAGTGGTAGTCGCTGGTAAGTTGTACTAG

Transcript

evm.model.contig_52000.3

ATGGCGGCCTTTCGCGACGAGCGCGTTAGGGACAAAAAAGGCTGTTTTCGCCGTGTAAAAGAATGCGAACGTCGACAGAATTTGCAGATCCAATGCAAACGGAAATTTGAGAAAGTGGGTGAAGATGTTGAGAACGGTAATGGCCGTAGAAGTGATTTTGAGCTGTCGGGAAGACGCGTTGTTGAGTTGGATTTGTTGGCGAAAGTACTAGATGAAGGCTGTAAAGCCTGCGGGAATCCGCTTCAGCTCTCGAACTGTTTTCATGAAACAGTTTCCGGACTCGGAAGCCTCTTGTACCTAACTTGTGCAAACGGTGAATGTGGAGAAATAAACGTGTGTAGAACTAACAAGACTCATCGGACCGGAAGCCTTCAGCGAGGGAGGCCCATATTTGATGTCAACACAAAGCTTGCAGCAGTTCCTTCACAAGCTCCCAGTGGTTTTACAGTAGCTGCAAGTACATCTACCAGTATCACAGCATCCTGGCAGTTACCACCAGAAAATTCCAGACATGGAAACATAACAGGATTTAAACTGTTCTACAAAGAGAAAGACTCTGTAGGGTCACCATTTGATATAACTATAAATGATGGAGGAAGTTACACTAAAGACATCATGGGGCTTTCAATATATACAGAATATGAATTTCAAGTGTTGGCATTTACTTCTAAAGGTGATGGACCAAAGAGTTCAGTGGTGGTTGAAAGAACAATGGAAGATGCACCAGATGTTCCTGCTGCCCTCAATCATTCTATTATAGCACCAGACAAGTCTCACGGCCCAAAATTCTCTGTCAGAGCTGTGACTATCAAACCTGGAGAAAATGTTACTTTAACTGTAGATATCCCAGAGTATGAATTTAATGGTAGTAGTGAATTAAAACGGATTCTCGCAAGAGAAATTAATCTCAGGAAAGCCGTTAATCAACTCTTCTGGATTtgcattaagTACAATGTGTCTGTTAGAGCTTACACTAAAGCAGGCCCTGGACCCTATAGTCAACCTATGATATTGCAAACATCAAGGCCAGAATCTCTCTGggatctgaaggaaaaaaattctggaacaacagaagtcacaCTGGAGTGGAAAAAACCAAATGTTACCACAAGGGAAAAGACCAGTTACACAGTTAGGTACAGTGGAACAAAGTCTTACAATAACAGTTTTAAACACGAgggcttaaaagaaaaaataaaggcaaCAACATATTCCGTGAAGAATCTAGTGCCAGGCTCTCACTATGATTTCGAGGTTTATGCAACCTCTGTTTGTGGCAGTAGTTCATCTTCAAATGTGGAAGTGGAAACAATAATAGAAGCTCCAATTGCACCAGTTGTAGTTAATTTGACCGATGTGACTGTCACCGAGTCAGTCGCTGAAATTTATCTCTGGCCTGTGGAACAAAGGAATGGTCCAATAAGTGCTTATCAAGTTATAGTTCTAAAAGTTGTTGATGGAATGAAAGAACTTCCAGATGATTATGATTCAAAACTGAAAGATTCAAACAACACCAACAAAGATAACTTGAACTTTTACATCGCTGCTGAGATACCAAATGTTCCAGTTTACGAGGAATCTTGGGAACTTACTATCGGTGATGGGAAAACGTATGGATCTTATGTTAATAAAGGACTGAAGAGTGGAGAAGATTACGTCGTCTATCAACGAGCTGTCACACATGACAAGGACCTGATTTTAGAAGGAGGTGTCAGCAAAGTAGCCCTTGTTTCTGTCACTGAAGAAGGCAAGATGAAGCCTTCTATCAAAGACCTGCCAGAGAAAACCATTCTAGCGGTTGACGATCTGGCAATATTAACATGTGAGGTCAGTGGAGATCCAGAACCGTCTGTTACGTGGAGTAAAGATGGAAACACTAACATACCGCGAGCTCAGTTTAGGAACGATGGACGTATTCTTGCTATCAAAGATGTTTTGCCCATTGACAGCGGTGTCTATGAATGCAAAGCATCCAACAAGTTAGGAGAAAGTCGTTCGTCTACATTAGTGGTAGTCGCTGGTAAGTTGTACTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR051622 all species →	Family	Receptor-type Tyrosine-protein Phosphatases	Interproscan
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24051 all species →	SUSHI DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_52000.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.