Gene detail

Detailed information of evm.model.contig_52054.7 in Platygyra sinensis

Genomic Location: contig_52054:88571...96454
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_52054.7

ATGGTCAGGAGCATGAGTACAAGATACAATCCAAGTACTCTGTCGATTAATCTATATTTAACAGAGCTGCCTGCGAGTCAGCCATTTGATTTCGAAGAGGAAGAAAGGGAGATAAATGTTAAGGACATATGTGGTTCTTTGGCAGAAAGCGTCGTAAATGACAAAGTCACTGAAATGACTAAGAATATATTTTTACATTATCAGTGTACTATCATGAATCCCCTCAGCAGCGTCGTCGATCGAGCAACTAGAAAGCAAGTAAACAAAGAACCTGCAAGAGCTAATGCCTCAATATCAGAGTCAATGCAACCTTTTGATAATGTGATCCTGGATTTTATGACAGAGCAAGATATACCTGGAGCAAGTGTTGCCTTGAGCAGACATGGAAATCTGCTGTATTGTCAAGGTTATGGCAGTGCTGGTATAGGAAGGAAAGTACAACCAGATTTGTTGTTCAGGATTGCCAGCATCAGCAAGACAATTACTGCTGTTGGTATCATGAGACTGGTTGAAGAAAGAAAACTTTCTCTAGAGGAAAGAGTATTTGGACCACAAGGAATTCTGACTCAGTACAGCCCAACAGAGAATGGAGACAGACGGATTGTAGACATCACAGTAAAACATCTACTGCATCACTCTGCTGGCTGGGATAGAGACAGGGCTGGGGATCCTGTCTTCTGGAAGGTTGGCAAGTACATGGATGTTGCTGAGCCTGTGACCCCTGGAATTTTGATAAAGTATATGATGGGAAGGAAGCTTCAGTTTGCTCCAGGCAAAAGACACGCCTATTCCAATCTTGGTTATACAGTTTTGGGACAAGTGATCGAAAGAAAGACAGGACAAGCCTATGAAGAATTCATGACTGGTCTGTTGGAGAGTGTTGTTATAAATCAAATGAAAATCAGCCGAACTCAGAAGAAAGATCTAGGTGATGAAGAGGTGGAATATTTCCACAATCGCCACCCAAGGATAGTGAAGTCAATATTTCCCGACGGGGGTAGAGTGCCTCCACAGTATGGGAGGTGGACCATGAAAGAGGCTGATGCGCATGGCGGGTGGACCGCCTCCGCTGCTGATTTACTGAAGTTCCTTCTCTCTTTGGAGTATGGTGTGAGTGGTAGCAGAATTATCTCGCCTGAAACTTTTGGAACAATGCTTGAAAAACCGTCCTTTGAAAAAGACGTAGAAGAATGGTACGGGTTTGGTCTTGACATCCGGGACAATGGTAGCACTTGGGGTCACAGCGGGCAAATGGAGGGTACCTCGGGTGTTTTAACGCGCCATTGTGGGGGATATGCTTGGGCACTTTTGTTCAATTCCTGGGCTAAAGACTTGGATTTAGACGGCTTGGTTAAGTATGCGTTGAGTTGCACTGCCACTGTTACAATTCAGCATATTTCTTGTGTACACCCCCGGGCCATTAGGACAGAAGACAATCGTCAAGTCATTAAATTGATGATACCAGTCTGTGATTTCTGGTCATTGTATGAAGATTTAAAACGAGAAGGATTTGATTTAACATGGCTTAACGCCTATAAAATGGCAGATGTTGTATACTTTAACACGATTTTCTTTCAAGGCTGCGGCTTAAAGTCGGCAACCACTGTTTACATTGGATTAACAGCCGACTCGTGTCGTGGTCAAGTTAACAGTCTTGTTGGTCTTCGGCCTTTCCATGTCGAGAGCTACGTCGAAAAAAACGAGCTTCTGTATGCTGTGCTCTTAACTCCTACAAATGGAGTGTCATGGGCGTTAAATTATGATCTCACTGTCGCTCAACATAGGAAAAATATGCCCGTAATGTTTAAAAGTGATTATAACTTGACAGTACAATGCCTGACTGAGTTTAAGGGTCGGTTACACGTGACAACTCTATACGAAAAAGTCCCGAATAGCGAATGTATCGCCGAGTTTGACCTTAAACCGGATTATTACCAGTTTGAATTTCACAGGCAAGCCAAGCAGGGTGTGACGTTATCTTACGCCAGGGCCTATCACGTGAAAGGCAAACCTCGTTTTAGTGTAGTATGGACCAATCAGATTGCGCGTTTAAGCGGAACCAGGCATAACGTTTCCAAATATGGCTTTTTGTTCGAGCTTGAAGAAGCAGCGAAGAAGAATTTCTATGCGCAGTGCATCAGTTGTTATGAAAGTGAAGATGTCCTTAATTTTATTGCATCGTGGAATAAAGCAATGGTTAAATAA

Transcript

evm.model.contig_52054.7

ATGGTCAGGAGCATGAGTACAAGATACAATCCAAGTACTCTGTCGATTAATCTATATTTAACAGAGCTGCCTGCGAGTCAGCCATTTGATTTCGAAGAGGAAGAAAGGGAGATAAATGTTAAGGACATATGTGGTTCTTTGGCAGAAAGCGTCGTAAATGACAAAGTCACTGAAATGACtaagaatatatttttacattatCAGTGTACTATCATGAATCCCCTCAGCAGcgtcgtcgatcgagcaactagaaagcaagtaaacaaagAACCTGCAAGAGCTAATGCCTCAATATCAGAGTCAATGCAACCTTTTGATAATGTGATCCTGGATTTTATGACAGAGCAAGATATACCTGGAGCAAGTGTTGCCTTGAGCAGACATGGAAATCTGCTGTATTGTCAAGGTTATGGCAGTGCTGGTATAGGAAGGAAAGTACAACCAGATTTGTTGTTCAGGATTGCCAGCATCAGCAAGACAATTACTGCTGTTGGTATCATGAGACTGgttgaagaaagaaaactttctcTAGAGGAAAGAGTATTTGGACCACAAGGAATTCTGACTCAGTACAGCCCAACAGAGAATGGAGACAGACGGATTGTAGACATCACAGTAAAACATCTACTGCATCACTCTGCTGGCTGGGATAGAGACAGGGCTGGGGATCCTGTCTTCTGGAAGGTTGGCAAGTACATGGATGTTGCTGAGCCTGTGACCCCTGGAATTTTGATAAAGTATATGATGGGAAGGAAGCTTCAGTTTGCTCCAGGCAAAAGACACGCCTATTCCAATCTTGGTTATACAGTTTTGGGACAAGTGATCGAAAGAAAGACAGGACAAGCCTATGAAGAATTCATGACTGGTCTGTTGGAGAGTGTTGTTATAAATCAAATGAAAATCAGCCGAACTCAGAAGAAAGATCTAGGTGATGAAGAGGTGGAATATTTCCACAATCGCCACCCAAGGATAGTGAAGTCAATATTTCCCGACGGGGGTAGAGTGCCTCCACAGTATGGGAGGTGGACCATGAAAGAGGCTGATGCGCATGGCGGGTGGACCGCCTCCGCTGCTGATTTACTGAAGTTCCTTCTCTCTTTGGAGTATGGTGTGAGTGGTAGCAGAATTATCTCGCCTGAAACTTTTGGAACAATGCTTGAAAAACCGTCCTTTGAAAAAGACGTAGAAGAATGGTACGGGTTTGGTCTTGACATCCGGGACAATGGTAGCACTTGGGGTCACAGCGGGCAAATGGAGGGTACCTCGGGTGTTTTAACGCGCCATTGTGGGGGATATGCTTGGGCACTTTTGTTCAATTCCTGGGCTAAAGACTTGGATTTAGACGGCTTGGTTAAGTATGCGTTGAGTTGCACTGCCACTGTTACAATTCAGCATATTTCTTGTGTACACCCCCGGGCCATTAGGACAGAAGACAATCGTCAAGTCATTAAATTGATGATACCAGTCTGTGATTTCTGGTCATTGTATGAAGATTTAAAACGAGAAGGATTTGATTTAACATGGCTTAACGCCTATAAAATGGCAGATGTTGTATACTTTAACACGATTTTCTTTCAAGGCTGCGGCTTAAAGTCGGCAACCACTGTTTACATTGGATTAACAGCCGACTCGTGTCGTGGTCAAGTTAACAGTCTTGTTGGTCTTCGGCCTTTCCATGTCGAGAGCTACGTCGAAAAAAACGAGCTTCTGTATGCTGTGCTCTTAACTCCTACAAATGGAGTGTCATGGGCGTTAAATTATGATCTCACTGTCGCTCAACATAGGAAAAATATGCCCGTAATGTTTAAAAGTGATTATAACTTGACAGTACAATGCCTGACTGAGTTTAAGGGTCGGTTACACGTGACAACTCTATACGAAAAAGTCCCGAATAGCGAATGTATCGCCGAGTTTGACCTTAAACCGGATTATTACCAGTTTGAATTTCACAGGCAAGCCAAGCAGGGTGTGACGTTATCTTACGCCAGGGCCTATCACGTGAAAGGCAAACCTCGTTTTAGTGTAGtatggaccaatcagattgcgcgTTTAAGCGGAACCAGGCATAACGTTTCCAAATATGGCTTTTTGTTCGAGCTTGAAGAAGCAGCGAAGAAGAATTTCTATGCGCAGTGCATCAGTTGTTATGAAAGTGAAGATGTCCTTAATTTTATTGCATCGTGGAATAAAGCAATGgttaaataa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00144 all species →	Beta-lactamase	Beta-lactamase	Domain	Interproscan
PF17660 all species →	BTRD1	Bacterial tandem repeat domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001466 all species →	Domain	Beta-lactamase-related	Interproscan
IPR050491 all species →	Family	Bacterial Cell Wall Synthesis and Modification	Interproscan
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR049511 all species →	Repeat	Polyglycine hydrolase-like, tandem repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46825 all species →	D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.contig_52054.7. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_52054.7.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.