Gene detail

Detailed information of evm.model.contig_52361.4 in Platygyra sinensis

Genomic Location: contig_52361:33481...44288
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_52361.4

ATGTTTGGACGTATCAGAGGACTAACGGAGGGAGCCAATCCCTCATGGAAAAATCAGAGTTTTAGAAAGGAGAAGAAAGTGGAAGATCTGGGAGAGACAGAAGAGATTGAAGAAATGATAGCTGATGGTTTATCTCAGTTTAGGGACGGGTCTGCTGATGGAAACCCTTCAAGTTTATCTCAATCTCTTCTTAGCGGTATTAAGGGCTGTGAACTGACAGATATCACATGCTTACAGGAGTACATCCACTTGCAAACTGTAATTCTTTCACACAATCACTCACAGGAAGTGATTATGTCAGACAACAAAATAGAAACCCTTCCAGATCTGTCAGCTCATCAGTGCTTGACAAGTCTTATGCTGGACGTATCCTTTAAAAAAGTTTGGGAGCAAGGTAGAGAGGGAAGTGCATGGGATGAGATAGGTCTGTGTTGTGATAAGATAATTGATATTGCTGAAGTGAGGTACATCCGGGAACTGGGTTTGTTACGGAACCTTAACTTGCTTGGAAATCCGATCCAGGGTATGCCAGATTACAGACTTTCCTTGCTGTTCAGAATACAAAGCCTGACGGAACTAGATCGTTCTAAAGTGTCGGTTGAGGAAAAAGTTTCAGCCATCAACATGTTTAACCCTCCTGCAGAGGTTATCGCAGCACGTGATCACATGTTTCACGTGACAAAGTCGCTTCTTCAGCCGACGAGAATTCACGATAGCACCCTTCCAAGTGTGGACACACCATATCCTATGTTAATCTTGTGTGGACCGCCTGGATCAGGCAAGCGATATCTGGCGCGGAGACTGTGCCAGGAGTTTCCAGACTTTTTTGGATTTGGTATCAGTCACACCACAAGAACGCCTCGAAAGAAAGAAGAAAACCTTGAAGATTACTATTTTGTGACTCAAGAGGAGTTTGAACAAGGAGTTGTGATGGGTAAGTTCTTGCAGACGTGCCAGCTGGCGGGGAACTGGTATGGTGTCACGAGAGAGGCCGTGGAAAATGTGGCCCGTGAGGGGCTTGCCGCGGTTTTCCACATGGACTTAGAGGGAGTGTTAAGTTTAAAGAACACTTATTTTGAGCCCAGATATGTTTTGGTGGTGCCCGTATCAAGAGAGATTCATGAAGCTCGTCTTCGGGAGCGTGGGGATTATGCAGAGCCTCAGTTACTTCAGTCATTAGATCGAGCTGAGTTGTGTCTGAAACATAACAGACAAAACCCAGGCTTCTTTGATATGGCTATTAACAGCGAAGATCTTAGTGACGCTTACAAGCGCCTTAAACGCCTTATCATGGAATACCTTGGGATGTCGCCACCCTCCACAGTACAATCTGAGCTATTTAGTGATAGTATGACGTCAGTAGATACCAGCCAATCAGAGGATACCCTTCAGCAGGGCGCGAAATCAGGCACTAGTCAAACAACAAGTATGACTGTTAACATGGCTGTAAGGACCTGGTCACGACGGTCTGATTCATCGACTATCCCTCCTAAGGGAGTTAAATTGGTACAACAAAAGACACCGGTGGAAATTCTATCGCTAAAACGTCGACAGACAAAAGCTAAAGCAGCAGTGGCTGGAATTCATCAGGTTTCGCTGGAGCAGTTTATTAACTCAAGGCAAACGGTCTCGGCTAGCTTTCAGCCTTCCTCAGCCCACTACTCCCCGGACATCAAGCGTTCATCCTCAGTCCCTCTCAATTTTAACGCTTCACTGGCTTCCATGGTCGCCAACGCTAGTAGTCAAAACGAGGCCAGAGAGGCAGGCCTGGAATCGAACATTTCTGAGTCCGAAGAGGAAGAAGAAACAACTTCGTCTATCGTGTCATCTGCGCGTGCGTATTCCAACGATGAGGCTCAGTCTTTAAGAGACTCGGACGATGAAGAAGAGGACTCGAGAAATTTGCTTGATTTTATCCCAACAGAGACGTTCGACTCGCAGGAAACAGGATCAGTGCCGTTTTCAGGAGTTTTCGGCCAAGTTGAAATTGCCAATTCTATTTAA

Transcript

evm.model.contig_52361.4

aTGTTTGGACGTATCAGAGGACTAACGGAGGGAGCCAATCCCTCATGGAAAAATCAGAGTTTTAGAAAGGAGAAGAAAGTGGAAGATCTGGGAGAGACAGAAGAGATTGAAGAAATGATAGCTGATGGTTTATCTCAGTTTAGGGACGGGTCTGCTGATGGAAACCCTTCAAGTTTATCTCAATCTCTTCTTAGCGGTATTAAGGGCTGTGAACTGACAGATATCACATGCTTACAGGAGTACATCCACTTGCAAACTGTAATTCTTTCACACAATCACTCACAGgAAGTGATTATGTCAGACAACAAAATAGAAACCCTTCCAGATCTGTCAGCTCATCAGTGCTTGACAAGTCTTATGCTGGACGTATCCTTTAAAAAAGTTTGGGAGCAAGgtagagagggaagTGCATGGGATGAGATAGGTCTGTGTTGTGATAAGATAATTGATATTGCTGAAGTGAGGTACATCCGGGAACTGGGTTTGTTACGGAACCTTAACTTGCTTGGAAATCCGATCCagGGTATGCCAGATTACAGACTTTCCTTGCTGTTCAGAATACAAAGCCTGACGGAACTAGATCGTTCTAAAGTGTCGGTTgaggaaaaaGTTTCAGCCATCAACATGTTTAACCCTCCTGCAGAGGTTATCGCAGCACGTGATCACATGTTTCACGTGACAAAGTCGCTTCTTCAGCCGACGAGAATTCACGATAGCACCCTTCCAAGTGTGGACACACCATATCCTATGTTAATCTTGTGTGGACCGCCTGGATCAGGCAAGCGATATCTGGCGCGGAGACTGTGCCAGGAGTTTCCAGACTTTTTTGGATTTGGTATCAGTCACACCACAAGAACGCctcgaaagaaagaagaaaacctTGAAGATTACTATTTTGTGACTCAAGAGGAGTTTGAACAAGGAGTTGTGATGGGTAAGTTCTTGCAGACGTGCCAGCTGGCGGGGAACTGGTATGGTGTCACGAGAGAGGCCGTGGAAAATGTGGCCCGTGAGGGGCTTGCCGCGGTTTTCCACATGGACTTAGAGGGAGTGTTaagtttaaagaacacttaTTTTGAGCCCAGATATGTTTTGGTGGTGCCCGTATCAAGAGAGATTCATGAAGCTCGTCTTCGGGAGCGTGGGGATTATGCAGAGCCTCAGTTACTTCAGTCATTAGATCGAGCTGAGTTGTGTCTGAAACATAACAGACAAAACCCAGGCTTCTTTGATATGGCTATTAACAGCGAAGATCTTAGTGACGCTTACAAGCGCCTTAAACGCCTTATCATGGAATACCTTGGGATGTCGCCACCCTCCACAGTACAATCTGAGCTATTTAGTGATAGTATGACGTCAGTAGATACCAGCCAATCAGAGGATACCCTTCAGCAGGGCGCGAAATCAGGCACTAGTCAAACAACAAGTATGACTGTTAACATGGCTGTAAGGACCTGGTCACGACGGTCTGATTCATCGACTATCCCTCCTAAGGGAGTTAAATTGGTACAACAAAAGACACCGGTGgaaaTTCTATCGCTAAAACGTCGACAGACAAAAGCTAAAGCAGCAGTGGCTGGAATTCATCAGGTTTCGCTGGAGCAGTTTATTAACTCAAGGCAAACGGTCTCGGCTAGCTTTCAGCCTTCCTCAGCCCACTACTCCCCGGACATCAAGCGTTCATCCTCAGTCCCTCTCAATTTTAACGCTTCACTGGCTTCCATGGTCGCCAACGCTAGTAGTCAAAACGAGGCCAGAGAGGCAGGCCTGGAATCGAACATTTCTGAGtccgaagaggaagaagaaacaACTTCGTCTATCGTGTCATCTGCGCGTGCGTATTCCAACGATGAGGCTCAGTCTTTAAGAGACTCGGACGATGAAGAAGAGGACTCGAGAAATTTGCTTGATTTTATCCCAACAGAGACGTTCGACTCGCAGGAAACAGGATCAGTGCCGTTTTCAGGAGTTTTCGGCCAAGTTGAAATTGCCAATTCTATTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00625 all species →	Guanylate_kin	Guanylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008145 all species →	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR008144 all species →	Domain	Guanylate kinase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23117 all species →	GUANYLATE KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004385 all species →	Molecular Function	guanylate kinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25549	LRGUK; leucine-rich repeat and guanylate kinase domain-containing protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.