Gene detail

Detailed information of evm.model.contig_53782.6 in Platygyra sinensis

Genomic Location: contig_53782:39448...41901
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001165 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05033 all species →	Pre-SET	Pre-SET motif	Family	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007728 all species →	Domain	Pre-SET domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR051357 all species →	Family	Histone-lysine N-methyltransferase SUVAR3-9	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45660 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0016571 all species →	Biological Process	obsolete histone methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_53782.6.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.