Gene detail

Detailed information of evm.model.contig_53804.1 in Platygyra sinensis

Genomic Location: contig_53804:485...27530
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_53804.1

ATGAGCCGCCTCTTGGAGGTTCAACTGTCTCCTTCCAGTTGGAAAATATACATGCACTGTACATTTAATGCAGTGTTCTTGAGTGTTGGATACCACTTTTTCGTGGGTCGTTTGGAGAATGCCATTGGTTGGTATCACAGTCATCCTGGTTACGGCTGTTGGTTGTCAGGAATTGATGTTGGCACTCAGATGGTGAACCAGCAATTTCAGGAACCTTTTGTAGCTATTGTGATTGATCCTACAAGAACTATTTCAGCAGGAAAAGTTAATTTAGGAGCATTCAGAACCTATCCGAAGGGCTACAAACCACCAGATGAAGGGCCATCAGAATATCAAACTATCCCACTGAACAAGATTGAAGACTTTGGAGTTCATTGTAAACAATACTACTCTTTGGAGGTGTCATATTTCAAGTCCTCGTTAGACAGAAAGCTTCTTGAAATGCTGTGGAATAAATATTGGGTTAACACGCTCTCATCTTCAAGTCTGCTCACGAATGCAGATTACACCAACCATCAAATTGCTGATCTTTCCGAGAAATTGGAACAAGCTGAATCTCAAACGCAATACCACAGAGAATTCAGAGATAAAATTTATGTGGGAGATGTTAAGCTATTTAAAGCAGCGGTTTCATTAAGTGTTTGTGCAGGAGGCCAAGACTTTGCATTGGAAGTTATTCAGGCTTACTTCAACTTTGGGATTATGAAAAAAAATCTGGTGACATTTCCATCTGACAGAGAACTACTAACAAGTCGAATGTTTGATCAGCGTCAACTGATGATCCAGTGCATAACATTCAATCCAACTGGAGATCTCTTAGCTGTTGGATTTACAAATGGCAGTGTACGTATCTTGGATGGTTTGATGCTGAAGGAAGAAGGGCGTGGTGATGGACTGGCTGTATTCAGTCACTGTCATGACTGTGTCACTAATATCAAATTCTCTCATGATTCCCACTACTTGGCCACCAGTGATCTAGACCGCTGTGTAACAGTTTTCAAGGCGCAGGAAAATGATTCAGATCAACCTTGGGTTTACATTGGCAAACAGAGAGCGCACTACAAAAAAATTCATGACGTCGACTTTGGAATAGCTCTTGACAGCGACATACCTCGGTTGCTTTCGCTTGGTGAAGACAGAGTATTGGTGGAATATGATCTTCTGAACAGCAGCACTGATGATCTACGTCTTATCAGCTCTGAGAGAATCGAACAAAGCGCAGTGCCTCAGTGTTTCGCTTGGTACCCGCCGATTGTCAAGGAGAACTTTCTTGTAGTCGCAAATGATCAGTTCAAACTAAAGCTGTATAACTCAACTACAAAGATGTGTAGACAGACATTACTGGGACCGACGTATGGTACTCCGCTTAGAAGGCTGATTGTGTTACCACCTTCTGAGGAAAGATTCACGCGGTATCTCGCTTACATCACAGTGGATAAAGTTGGACTTCAGTGTCTACCGTTAGATGGCAATCCACATAAGACCATGGCCTTGATCGCACATCCAGAGGGAGTGTCTAACTTGGTTTGTTCTTATGACGGCAAGTACGTGTTCACGGCTGGGGGAGAGGACTGTAGTGTACTGATGTGGGAAATTAACCTGGACGCTCTGGAAGCAGCGGCCGCACTTGGTGGAGAGGGCCTGGTTCCATTCTACGGTTTGTTAGAAGGCGGTCGGGATGGTGAGCTGTTTGCTGAGCTCGAGGATTATTTCTATTACGCACAGATTAGAAGCCAAGGTGTGGACACCACAGATACAAGACAAGTATCAACAAAGGTTCCCCTGGGGCAAGTTCCGTACATCATGCGAGCCTTGGGATTTTATCCCACGGAGCAGGAGATTGATGACATGATCAACGAGTTAAAATTTAGTAATTATGTCGCAACTGGAAAATACGTCACCGAGATCGATTTGGGTGAATTTATAAAGCTGTATGTTAATCATCGTCCTGCCTTTGGGCTGTCTCCGTTTGACTTACATGAAGGATTCACCAAGCTTGGTACGCCTGGTGACGAAGGATTCGCCATTGATCGTGACAGACTATTGGCACTTCTACAGAACAAAGCTCTTATTAGCCGAGCAGGAGGTCTGTATGGGAGAATCTTGACCGAGGTCGATCACACGACCGATGTCAAGATTCTTCCATACAGACCGACTTAG

Transcript

evm.model.contig_53804.1

ATGAGCCGCCTCTTGGAGGTTCAACTGTCTCCTTCCAGTTGGAAAATATACATGCACTGTACATTTAATGCAGTGTTCTTGAGTGTTGGATACCACTTTTTCGTGGGTCGTTTGGAGAATGCCATTGGTTGGTATCACAGTCATCCTGGTTACGGCTGTTGGTTGTCAGGAATTGATGTTGGCACTCAGATGGTGAACCAGCAATTTCAGGAACCTTTTGTAGCTATTGTGATTGATCCTACAAGAACTATTTCAGCAGGAAAAGTTAATTTAGGAGCATTCAGAACCTATCCGAAGgGCTACAAACCACCAGATGAAGGGCCATCAGAATATCAAACTATCCCACTGAACAAGATTGAAGACTTTGGAGTTCATTGTAAACAATACTACTCTTTGGAGGTGTCATATTTCAAGTCCTCGTTAGACAGAAAGCTTCTTGAAAtgctgtggaataaatattGGGTTAACACGCTCTCATCTTCAAGTCTGCTCACGAATGCAGATTACACCAACCATCAAATTGCTGATCTTTCCGAGAAATTGGAACAAGCTGAATCTCAAACGCAATACCACAGAGAATTCAGAGATAAAATTTATGTGGGAGATGTTAAGCTATTTAAAGCAGCGGTTTCATTAAGTgtttgtgcaggagGCCAAGACTTTGCATTGGAAGTTATTCAGGCTTACTTCAACTTTGGGATTATGAAAAAAAATCTGGTGACATTTCCATCTGACAGAGAACTACTAACAAGTCGAATGTTTGATCAGCGTCAACTGATGATCCAGTGCATAACATTCAATCCAACTGGAGATCTCTTAGCTGTTGGATTTACAAATGGCAGTGTACGTATCTTGGATGGTTTGATGCTGAAGGAAGAAGGGCGTGGTGATGGACTGGCTGTATTCAGTCACTGTCATGACTGTGTCACTAATATCAAATTCTCTCATGATTCCCACTACTTGGCCACCAGTGATCTAGACCGCTGTGTAACAGTTTTCAAGGCGCAGGAAAATGATTCAGATCAACCTTGGGTTTACATTGGCAAACAGAGAGCGCACTACAAAAAAATTCATGACGTCGACTTTGGAATAGCTCTTGACAGCGACATACCTCGGTTGCTTTCGCTTGGTGAAGACAGAGTATTGGTGGAATATGATCTTCTGAACAGCAGCACTGATGATCTACGTCTTATCAGCTCTGAGAGAATCGAACAAAGCGCAGTGCCTCAGTGTTTCGCTTGGTACCCGCCGATTGTCAAGGAGAACTTTCTTGTAGTCGCAAATGATCAGTTCAAACTAAAGCTGTATAACTCAACTACAAAGATGTGTAGACAGACATTACTGGGACCGACGTATGGTACTCCGCTTAGAAGGCTGATTGTGTTACCACCTTCTGAGGAAAGATTCACGCGGTATCTCGCTTACATCACAGTGGATAAAGTTGGACTTCAGTGTCTACCGTTAGATGGCAATCCACATAAGACCATGGCCTTGATCGCACATCCAGAGGGAGTGTCTAACTTGGTTTGTTCTTATGACGGCAAGTACGTGTTCACGGCTGGGGGAGAGGACTGTAGTGTACTGATGTGGGAAATTAACCTGGACGCTCTGGAAGCAGCGGCCGCACTTGGTGGAGAGGGCCTGGTTCCATTCTACGGTTTGTTAGAAGGCGGTCGGGATGGTGAGCTGTTTGCTGAGCTCGAGGATTATTTCTATTACGCACAGATTAGAAGCCAAGGTGTGGACACCACAGATACAAGACAAGTATCAACAAAGGTTCCCCTGGGGCAAGTTCCGTACATCATGCGAGCCTTGGGATTTTATCCCACGGAGCAGGAGATTGATGACATGATCAACGAGTTAAAATTTAGTAATTATGTCGCAACTGGAAAATACGTCACCGAGATCGATTTGGGTGAATTTATAAAGCTGTATGTTAATCATCGTCCTGCCTTTGGGCTGTCTCCGTTTGACTTACATGAAGGATTCACCAAGCTTGGTACGCCTGGTGACGAAGGATTCGCCATTGATCGTGACAGACTATTGGCACTTCTACAGAACAAAGctcttattagccgagcaggaggtctgtatgggagaatcttgaccgaggtcgatCACACGACCGATgtcaagattcttccatacagaccgacttag

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Jab_MPN · all ubiquitin genes in this species
Ubiquitin family	DUB\|JAMM\|JAMM · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18323 all species →	CSN5_C	Cop9 signalosome subunit 5 C-terminal domain	Domain	Interproscan
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR050630 all species →	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR040961 all species →	Domain	Cop9 signalosome subunit 5 C-terminal domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720 all species →	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_53804.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.