Gene detail

Detailed information of evm.model.contig_54059.5 in Platygyra sinensis

Genomic Location: contig_54059:28369...46552
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_54059.5

ATGGCCACCAGACTCGAACGGCTTTTTCTGCTCCTGGACACTGGCTCCACAGCGGTGACTCGGAAGGCCGCAGCTCAACAGCTCGGCGAAGTGCAAAAACTACATCCTCATGAGCTTCAGAATCTCCTTAGTAGGGTCCATGTCTTTCTGAAGAGTAACAGCTGGGATACACGGATTGCTGCTGGGCAGGCCATTGAGGCTATTGCACAGAATGTACCTCAGTGGAATCCAGCAGTACAAAACATCAAAGCGGAACCATCAGAAAGTAGCAAGACATTTGTCAACAAGGAAACAGTTGAAAGTGAGCTTCTAGAGTTCTCCAAGTTTGATATCAACCGTGTATTGAAACATGGAGAGCGTCTTGTCGGCTCCTCAGGGGCTGAGTATGATCTCCCTGATGAAGATCTTGTAGGCCTTGAACCAAAGGAGAGGTTAAACAGACAGCAAAAGCTACTAAGGAAGCGGCTTGGCTTAGATATCGCACCTGGAATAGATGTTGGAATGGATAAACTGTTTGATGATGAAGATCTGTTGATTAATCCTCCTGAGACAAAAGGGAAATCTTTGACCAAACAAAAATCTTTTGAGAGTGCAGCTGAGGTGGTGGCAGCAGAAATTGCTGCAATTAGTTCATCAGCTCAGCTGAGTTCACGAGAGAAGAACAGAGCCATTAGAAAGGCAAAAATGCTAGCCAAGCAAAGATCTAAAGAAGCGTCAAAAGAGGGAGATTCAATGCAAGGATCATTCAATAACAGTGTTAGCATTGACAATGACGTGGAAACAGACCAAGGCCCAGTTTCCAAGAAACGCAAGACAGCTAGTGTTATTGTTGATCAACCTGCAGAATCTGACAAGATGGTTGTGGATCAGGTTACAGATGTGTCAGCAACATTTGATGAGTCAACTGAATGGCCATTTGAAAACTTTTGCCAAGAACTATGCCAAGATCTGTTTCATCAGTCATGGGAGGTACGTCACGGAGCATCCACAGGCCTTAGAGAAATAATAAAGGTTCATGGGCGAGGTGCAGGGAAGACCTTAGATTCATCAACTGAGGATATTCAGATTCAAAACAGGAAGTGGTTAGAAAACATGTCACTTCATCTTCTCTGTGTCATGGCTCTTGATCGATTTGGAGATTTTGTGAGTGATGAGGTTGTTGCCCCAGTTCGTGAGACTTGTGCGCAGACAATAGGAGTGATCTTAAAGCATACTGATGCTGAGACTGTTAAGAGAGTGATGATGGTCCTATTAACATTACAAGCTCAGGAAGAATGGGAAGTTCGTCATGGTGGATTGATGGGACTCAAGTATCTCATGGCTGTCAGACAGGATCTGACAGAAGATTTACTGCCATTAGTGTTAGATCCTATTATAACAGCTCTTAAAGATGATGACGATGATGTTCGGGCAGTGGCTGCATCAGCTCTGTTACCTGTAGCAGAGTCATTAGTTACATTTGCTTCAAATCGCGTGCAAGAAGTCCTTGTGACTTTATGGGACACACTTGTTGAACTGGATGACTTGACAGCTTCAACCAACAGCATTATGTTGTTACTGGCAAGAATTTTGTCCTGTCCATCTGTTGCCCCGCAAGGAACAGGTGGCAAGGATTCCTCTCTCACTGAACTGGTGCCGCGACTGTGGCCTTTCTTCCGTCATAATATTAAGTCTGTTCGATTGGCAGCATTAGAAACTCTAAAAACTCTTTTGGTCGGAAATATGAAACATAAGGCTGAAAATGAAAAGATGCCAGAATGCTTGTGGCTAACGCCAATCCTGCAGGATTCATTGAGACATATTTACCAAAGATTTATTCTGGAATCTGATGGCGATGTTGTGGAGATGGTACATAAGGTGTGGAGTGTGATGCTGGAGAGATCAGCCAAGAGTCTCCTAGGAAGCATCACGATTTCATTCCTTAACAGTTGGCTTGGTATGACGATGATGCCAGCCTGTGTTCCAATTGATCATACAGCTCTTATCCAAGCTCTGCACAGAACTCAGAACAAGGGAGACCGCAGTGTAGATAGAGCACACATGATTAGAGGCCGACCATTACAGACTCATACTGAACCTCAATCAGAAGTCATAGCAGGTGCCACCCTTGCCACTAGTTTGTCGGCACGTGAGCCAGCAGTATTACGAGCAAGGCTCGCAGCATCAAGCCCAAATGCTGCTGGACTATGTCCATCATGTCAGAGTTCTAAGAGAGAAGTGACTACTCAAAAGTGCTTGGAGGATTGGCTAATAGAACTTTGCCATCCAATCAGAACCAAAGTCAAAACCAATCACCACTCACTTGCTTATGTTTTCCCAAGCATTGCGTCAGCTATTGGCCATACTGATAACATTAGTTTTGACTTTATGAGCACTGAAAGAGCCCTTGGACTGTTAGCATCTCATTATGCCAGGTGTCCTGTTGCCCAAGACAATGGTGTTCATCCTCTTGACTTTTTGATGCAAACTCTACAGTTTCCCCTTGGTTCAAACTCAGGGATCCAGAGAATGTGTGCCTCGTTAATATTGACAGAGTGGGCCAGCTGTCCAGTGGAATGCAAGTGTCCTGATGAAAATGTGATGCAGTTAAACAACATTTTATCTGAGCAAGTTGTGTATGATGAGATTGCTGTCCTCAATACAAGACTGCAAACAGATTGTCAGGGCCTGCTTATAGCACTGCGGGAGAAAGGGGTTGATGCCTCAGCTGGGATTCAACCAGGCTGTTACACAGTTGACAATGCTATAAAGCTGGCCTCAGATATTTTCACTCAAGTGTCTAAAAAACTCTCACAACAGGATCTCAAGGTTTGTGAATACCAGTTTACCATTTGA

Transcript

evm.model.contig_54059.5

ATGGCCACCAGACTCGAACGGCTTTTTCTGCTCCTGGACACTGGCTCCACAGCGGTGACTCGGAAGGCCGCAGCTCAACAGCTCGGCGAAGTGCAAAAACTACATCCTCATGAGCTTCAGAATCTCCTTAGTAGGGTCCATGTCTTTCTGAAGAGTAACAGCTGGGATACACGGATTGCTGCTGGGCAGGCCATTGAGGCTATTGCACAGAATGTACCTCAGTGGAATCCAGCAGTACAAAACATCAAAGCGGAACCATCAGAAAGTAGCAAGACATTTGTCAACAAGGAAACAGTTGAAAGTGAGCTTCTAGAGTTCTCCAAGTTTGATATCAACCGTGTATTGAAACATGGAGAGCGTCTTGTCGGCTCCTCAGGGGCTGAGTATGATCTCCCTGATGAAGATCTTGTAGGCCTTGAACCAAAGGAGAGGTTAAACAGACAGCAAAAGCTACTAAGGAAGCGGCTTGGCTTAGATATCGCACCTGGAATAGATGTTGGAATGGATAAACTGTTTGATGATGAAGATCTGTTGATTAATCCTCCTGAGACAAAAGGGAAATCTTTGACCAAACAAAAATCTTTTGAGAGTGCAGCTGAGGTGGTGGCAGCAGAAATTGCTGCAATTAGTTCATCAGCTCAGCTGAGTTCACGAGAGAAGAACAGAGCCATTAGAAAGGCAAAAATGCTAGCCAAGCAAAGATCTAAAGAAGCGTCAAAAGAGGGAGATTCAATGCAAGGATCATTCAATAACAGTGTTAGCATTGACAATGACGTGGAAACAGACCAAGGCCCAGTTTCCAAGAAACGCAAGACAGCTAGTGTTATTGTTGATCAACCTGCAGAATCTGACAAGATGGTTGTGGATCAGGTTACAGATGTGTCAGCAACATTTGATGAGTCAACTGAATGGccatttgaaaacttttgccaAGAACTATGCCAAGATCTGTTTCATCAGTCATGGGAGGTACGTCACGGAGCATCCACAGGCCTTAGAGAAATAATAAAGGTTCATGGGCGAGGTGCAGGGAAGACCTTAGATTCATCAACTGAGGATATTCAGATTCAAAACAGGAAGTGGTTAGAAAACATGTCACTTCATCTTCTCTGTGTCATGGCTCTTGATCGATTTGGAGATTTTGTGAGTGATGAGGTTGTTGCCCCAGTTCGTGAGACTTGTGCGCAGACAATAGGAGTGATCTTAAAGCATACTGATGCTGAGACTGTTAAGAGAGTGATGATGGTCCTATTAACATTACAAGCTCAGGAAGAATGGGAAGTTCGTCATGGTGGATTGATGGGACTCAAGTATCTCATGGCTGTCAGACAGGATCTGACAGAAGATTTACTGCCATTAGTGTTAGATCCTATTATAACAGCTCTTaaagatgatgacgatgatgttCGGGCAGTGGCTGCATCAGCTCTGTTACCTGTAGCAGAGTCATTAGTTACATTTGCTTCAAATCGCGTGCAAGAAGTCCTTGTGACTTTATGGGACACACTTGTTGAACTGGATGACTTGACAGCTTCAACCAACAGCATTATGTTGTTACTGGCAAGAATTTTGTCCTGTCCATCTGTTGCCCCGCAAGGAACAGGTGGCAAGGATTCCTCTCTCACTGAACTGGTGCCGCGACTGTGGCCTTTCTTCCGTCATAATATTAAGTCTGTTCGATTGGCAGCATTAGAAACTCTAAAAACTCTTTTGGTCGGAAATATGAAACATAAGgctgaaaatgaaaagatgccAGAATGCTTGTGGCTAACGCCAATCCTGCAGGATTCATTGAGACATATTTACCAAAGATTTATTCTGGAATCTGATGGCGATGTTGTGGAGATGGTACATAAGGTGTGGAGTGTGATGCTGGAGAGATCAGCCAAGAGTCTCCTAGGAAGCATCACGATTTCATTCCTTAACAGTTGGCTTGGTATGACGATGATGCCAGCCTGTGTTCCAATTGATCATACAGCTCTTATCCAAGCTCTGCACAGAACTCAGAACAAGGGAGACCGCAGTGTAGATAGAGCACACATGATTAGAGGCCGACCATTACAGACTCATACTGAACCTCAATCAGAAGTCATAGCAGGTGCCACCCTTGCCACTAGTTTGTCGGCACGTGAGCCAGCAGTATTACGAGCAAGGCTCGCAGcatcaagCCCAAATGCTGCTGGACTATGTCCATCATGTCAGAGTTCTAAGAGAGAAGTGACTACTCAAAAGTGCTTGGAGGATTGGCTAATAGAACTTTGCCATCCAATCAGAACCAAAGTCAAAACCAATCACCACTCACTTGCTTATGTTTTCCCAAGCATTGCGTCAGCTATTGGCCATACTGATAACATTAGTTTTGACTTTATGAGCACTGAAAGAGCCCTTGGACTGTTAGCATCTCATTATGCCAGGTGTCCTGTTGCCCAAGACAATGGTGTTCATCCTCTTGACTTTTTGATGCAAACTCTACAGTTTCCCCTTGGTTCAAACTCAGGGATCCAGAGAATGTGTGCCTCGTTAATATTGACAGAGTGGGCCAGCTGTCCAGTGGAATGCAAGTGTCCTGATGAAAATGTGATGCAGTTAAACAACATTTTATCTGAGCAAGTTGTGTATGATGAGATTGCTGTCCTCAATACAAGACTGCAAACAGATTGTCAGGGCCTGCTTATAGCACTGCGGGAGAAAGGGGTTGATGCCTCAGCTGGGATTCAACCAGGCTGTTACACAGTTGACAATGCTATAAAGCTGGCCTCAGATATTTTCACTCAAGTGTCTAAAAAACTCTCACAACAGGATCTCAAGGTTTGTGAATACCAGTTTACCATTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12054 all species →	DUF3535	Domain of unknown function (DUF3535)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR044972 all species →	Family	TATA-binding protein-associated factor Mot1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR022707 all species →	Domain	Mot1, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36498 all species →	TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_54059.5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.