Gene detail

Detailed information of evm.model.contig_55244.12 in Platygyra sinensis

Genomic Location: contig_55244:62349...74815
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12066 all species →	SERRATE_Ars2_N	SERRATE/Ars2, N-terminal domain	Domain	Interproscan
PF00292 all species →	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001523 all species →	Domain	Paired domain	Interproscan
IPR021933 all species →	Domain	SERRATE/Ars2, N-terminal	Interproscan
IPR039727 all species →	Family	SERRATE/Ars2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13165 all species →	ARSENITE-RESISTANCE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0031053 all species →	Biological Process	primary miRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_55244.12.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.