Gene detail

Detailed information of evm.model.contig_55694.1 in Platygyra sinensis

Genomic Location: contig_55694:178...25284
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_55694.1

ATGGAAGACTTTGTTGAAAGTTGCTTTTGTTTTTTGTCATGCAGAAAGCTGTGTTTAGTTTGGCTGGTGGAAGTCTTGGACAAAGCTATCAACACTGGTGTTCTTGTAGTCATCAGTAAATATGTGAGCTTGGATTCCTTAGCAGAAAGCATTTTGCCATCCTCATTTGACCATAATCCCACCATATCATTGGAAGTTTCTCTTTGCCTGAATATTTTAGTTGATTTGAGAGTCCTATCGACCAAATGCCTGAGAAAATTCCTCGAGGATTGTGCTGTCCGTCTGATGGATGTGAATAAAGAAGTCTGCAAAAGTTACCAACAGCTCATCAAAGCTTTACCAACAGATATTTTAACAAGTTCCATAAGCCAGAGCCTGTTTGAATCAAGAACTAGTCAAGCCAGAGGAAGTGTAGATGTTGGCAAGCCCTTGATCACCAACTGCAGTGATGTGTGGTTGGCTCGTAAAGGTCATGCAGTCAAGCCACCATCTGGCTCTTTCCATTCTCATGATTTTCAAATGGTGATGGGATTTATCCTGTCAGGTGTTTTACCTAGCAAAGAGCCAAATGTCGACTGGTTGTTAAGGCTATTCCACAGTTGCAACAGAGTTCAGAAGTATGCAGAAACCGAGATGGTTCAGTTTAACAGGTGTGAATCACTGCTTTGGTTTTGGGCCACATGGGAAGCTGCGCAGTTCTGCATTTTATCGCGTCTGCGTACTCCACTTGGAAGAGCTCAGGAAACTTTTCAGGCGATAGAAGGTGCTCTGCAGAAGTTTGTGATGGATGCAAATGGAGAGGAAGAAGAAAGCAAACCTAAGCATGAAGAGCCAGGAGCCAAGGAGGAGGAGGGAAATGAAACAGCAGTTGCTGAATCCAAACCTTATGTCAACCACCTCCAGTCTGTTTTGCTGCTACAGTTCATAGAAAACCTTGAAAAGCTCATGTACAATGGCTATGAAGGATGTGTAGTAGGGCTACCCTCCCCACCCAAGTCTGTACGGGTATTTTTCCGCACAAATCGAAGCACATGTATTGAGTGGCTTACTAGAGTGCGTAAACCAGTGATGAGTGTGGGTTTGGTGTGTGGCTGTCCAGCAGCAACAGTCTGGCATGGATTTCAAATGCTGCAAGAAATGAAGACTGCAGGAAATACTCAGGGTGAAGAGTTTGACAGTGCTGTATTACTGACAGCTCAAGCTTTGTGTGAACTGAGAAGTGCTCATGCTATCACTGGTTTAGTGGCCTGGTGTGAACAGGTCTCTGGTCAGAAGTTCTCTTGGATGAATGGAACAATAATGAAAGCTAAGGGATGGTATGAGTCCTCAGCAACAGAAAACAAGTCAGCTGTAGAAGAGGTGTTGAACAAAGAGAAAAGCCACCAAGAAGAAAGAAAGACAACTGATGCACCTCCACCATGTACTGCTGTGACAGCATTCCTTGTTACTGAGGTTGCAGACTGTTACATGAAGTTATCATCTTGGAATGAGGTAGCAGAGTGGCAGAAGCATGTCAATAACCTGAGAAAACAATGTTCAGGCACAGAAGTACAGCATTCACTAATGGCAAATGTTGATATGAATTACGTCAAAGCTTTGAGCAAATTTGAGGAATGTGACTTCATATCAGTGCGGAACCACCTTAGATTGATCCCTGGAGCAGCACTGAACTCGCTGACTGAGAATCTGACCAAGTCTGCATGGTCTGTGAAGCTGAATCATCCGGACACAACATTTACTCCAGTCTGGGCTCCTTACAAGATTGAGCAGACAGCTGAACTATCCTTGATTCAGGCTCAGACACTGTTCTTTACGTCAGGAAATTTGAAAGCCAAGACAAAAGACAACAATGCAAAAGATCAGAAGATCATTCAAGCCATCAAGGAATGCATCCATCATGCCACATCACTGTCTGAAGGAGTGCTTAGAGTGGGAACACTGGGTTGGCCATTGGAAGTTTCTGCCTCTCACATGACTCAGCTGCAGTTTGCTACTACTTTAGAGAATATCTTGGAGACAGCCCTTCATCAGGAGGATGTATCTCCATCATTTCTTCAAGGAAATGGAACTTTCACTATAAATCACACCCAGCATGACTGTGCAGTTCTGATCAAGGCCTTAAGGTTTTGCGCAAACCTTCATTATGTTGCCTCTTCAATGGGAAAATATCAGGATCTTATGAAGAGTGAACTGGTCTCATTACAGTTGGCAGCAGCGAAACTTGCACGAAAGCATCACAACTATAATCTTGCACAAAGGCTTTTAGTGAAACAAGTTTCTTTGCTTGGAAATCCAGTGAAGATTCTGCAAGATTCAAACTGCAGTAAGAAACAATTTCTTGAACCATTAATGGAAAGCTTGAATGATCCATCTTTGGCCTCAGCAAAACCAGTTGATGTGATGGAAATACAGAGAGAATGTTCAAAGTTAGCTTTTGCATTAGGCCACACTTCAGAAGCTGTATATTTTCTCTCTGACAGCATTGTTCAGTATTCGAACTTGGGTGATATTGACTCAAACGTTGGTGTTGTAAACTCAAGATCACTGCTCGCTCTTGCCAAATGGCTGCTTAATGACAGAAAACTGTTGACTGCAGTCACTAAAATAAACGGAAATGGTCTTGCTGTAGCAACAAAAATCAGTTCACTGTGTGAGTTGGAGGCCAATTACGTGAGCCTTGGCCACAGCACCCTTATCCCAGCACAGGATGAATCAACAGAGAGCTATTTGAATTCTACTTCTGTTCCAAGTGTGGCCTGTGGAGTGACTGATGCCGAGTCTGTTTGTGGCCAGCTTCTACACTTGGCTACCATGCAAGCACCAGACTTGGGCAAGGTCTGGTTTAATTTGGCTGGATGGTGCTATCGATGGGGAAGAAAAACGGTTGAACAGGCTAGCTCAATGGGAAATGTTGATCTCTTACCACAAGAAAAGGAAACTGTGTTACAGAATCTGCCACAGAATGCTCGCCCTGCTGAGGTGGAGTCAGTTCTGCTAGTACTGGGCCAGGTTCATGTGACAGCTTATTTCAACCAGGATGAGGATATTGGTGAAGAGGATCAGCTGTATGATGATGGAGTAGAGAACACTAAGAAGCAGCTTGTCACAGTCTGCCTAGGATTACAGGATGCCCAACCTCAGCTGATGGAAAATCTCTTGTCTGTGTGGAAAGGTGTCAGGGACAGACTCTTTAAACACTACCATTTTGCTGCCAAAGCATACTTCATGTATCTCAGGATGGGAAATGTGGATTGCGATAGATCATCTGGTGAACTAAAGAATGAGAATGAAAACAAACATGCTTCTAAAAACAGTGATGATGACAGTAATGTAACCGCCACCTTGAGATTACTGCGTCTTCTTGTGAAACATGCTGGTGAGCTCCGTAGTGAACTGGAGGAGGGACTGGTGAATACTCCTACAAGACCTTGGAAAGACATAACTCCTCAGCTTTTCTCACGACTGAACCACCCAGAAAGCTATGTACGGCAGAGTGTCTCTGAGTTGCTGTGCCGTGTGGGTCAAGATGCACCACACCTGATAGTCTATCCTGCAGTGGTTGGGTGTTCTACGTCGCTTCCTAAGTACTTGCTGAACAAAGGCAAAGAAGGAGAGGGTCTTCTTCCACTTCTTGTGTCAACTTCCACTGACTCAGCAGAAAATAGTCAAAATCAAGGCTGCCAACCCTGTGATGCCCAAGGCAGCAAGACAGAGAGTGACGCATTGACCAGTTGCTACCAGACCATCGTTGAATCTATCAGAACGCACAATCCTCAGCTAGTATCTGACCTGCAGGGTTTTATCATGGAGTTACGCAGGATCACTCTACTGTGGGAAGAGTTGTGGCATGGCTCACTTATGCAGACTCATCATGACGTAACACGCCGGCAGCAACAACTTGAGGACGAGATCAAGAGAGTCAATGGCAACCAGAATCTGACCAATCAGCAGAAGACGACACTTATCAGGGAGAAACATATTGCTATCATGAAACCCGTTGTTTTTGCATTAGAACAGTTGAACAAAATAACCTGTCAAGAGACTGCCACACCTCACGAGCAATGGTTCCAGATGAGCTACAGTGATGCTATTCAAGGAGCACTGGAAGCGTTACAGAGCCCTCCTGATCCTGCTGACCACAGATCCAGCTGGGAGCCATTTAAACAGCTATTACAAGCATTCCAGGCCAGATCTCAAAAGCGTTCAGCTTACACCCTTTACATGGATGAGATCAGCCCTTCACTTTCCAGTCTAAAAGCTTCTGCAGTCTACATGCCAGGCCAGACACATTTCAGTGGAAAGATTGTCACCATTGATTCTGTAATCAGAGAAGTCAACATTCTGCCAACCAAAACCAAGCCCAAGAAGCTGGTGTTTGTCGGATCCGATGGGCAGAGGTACACATATTTATTTAAAGGACTTGAAGATCTCCATCTTGATGAAAGAATCATGCAGTTCCTCTCCATCTGTAACAACATGTTTGCCAGAGTTGACAGCCACAATTCTCCTCAGTTTTGTGCTCGCCATTACTCTGTCACGCCTCTTGGTCCCCGGTCAGGCCTTATTCAGTGGGTGGATGGCGCTGTTCCTGTGTTTGCCTTGTTCAAACGGTGGCAGCAAAGAGAAGCCTTGGCCATCGCACTGGTGAAGTCTTCACAGGGTGCAAATCAACCCCCACCTCCACCCATGAAACCAAGTGAACTTTACTACAGCAAAATTACTCCTGCCCTCAAAGAGAAGGGTATCACAGACCTGTCCAACAGAAAGGATTGGCCTCTAAGTGTGATGAGACATGTTTTGGAGGAACTCATGAAGGAAACTCCCAATGACCTGTTAGCTAAAGAGCTGTGGTGTTCTAGTACCAGTGCAGCTGAGTGGTGGCAGATGACTCAGAGTTATGCTCGATCCACTGCAGTCATGTCTATGATAGGTTACATTATTGGCCTTGGAGACAGACATCTGGATAACATGCTGGTAGATTTCACCACAGGGGAGGTTGTCCATATTGACTACAATGTGTGCTTTGAGAAGGGTAAAGGACTGAGAGTTCCTGAGAAGGTTCCATTTAGAATGACACCTAACCTGGAGACAGCCCTGGGAGTGACTGGAGTGGAGGTAATATTTGCAAACTAG

Transcript

evm.model.contig_55694.1

ATGGAAGACTTTGTTGAaagttgcttttgttttttgtcatGCAGAAAGCTGTGTTTAGTTTGGCTGGTGGAAGTCTTGGACAAAGCTATCAACACTGGTGTTCTTGTAGTCATCAGTAAATATGTGAGCTTGGATTCCTTAGCAGAAAGCATTTTGCCATCCTCATTTGACCATAATCCCACCATATCATTGGAAGTTTCTCTTTGCCTGAATATTTTAGTTGATTTGAGAGTCCTATCGACCAAATGCCTGAGAAAATTCCTCGAGGATTGTGCTGTCCGTCTGATGGATGTGAATAAAGAAGTCTGCAAAAGTTACCAACAGCTCATCAAAGCTTTACCAACAGATATTTTAACAAGTTCCATAAGCCAGAGCCTGTTTGAATCAAGAACTAGTCAAGCCAGAGGAAGTGTAGATGTTGGCAAGCCCTTGATCACCAACTGCAGTGATGTGTGGTTGGCTCGTAAAGGTCATGCAGTCAAGCCACCATCTGGCTCTTTCCATTCTCATGATTTTCAAATGGTGATGGGATTTATCCTGTCAGGTGTTTTACCTAGCAAAGAGCCAAATGTCGACTGGTTGTTAAGGCTATTCCACAGTTGCAACAGAGTTCAGAAGTATGCAGAAACCGAGATGGTTCAGTTTAACAGGTGTGAATCACTGCTTTGGTTTTGGGCCACATGGGAAGCTGCGCAGTTCTGCATTTTATCGCGTCTGCGTACTCCACTTGGAAGAGCTCAGGAAACTTTTCAGGCGATAGAAGGTGCTCTGCAGAAGTTTGTGATGGATGCAAATGGAGAGGAAGAAGAAAGCAAACCTAAGCATGAAGAGCCAGGAGCcaaggaggaggagggaaatgAAACAGCAGTTGCTGAATCCAAACCTTATGTCAACCACCTCCAGTCTGTTTTGCTGCTACAGTTCATAGAAAACCTTGAAAAGCTCATGTACAATGGCTATGAAGGATGTGTAGTAGGGCTACCCTCCCCACCCAAGTCTGTACGGGTATTTTTCCGCACAAATCGAAGCACATGTATTGAGTGGCTTACTAGAGTGCGTAAACCAGTGATGAGTGTGGGTTTGGTGTGTGGCTGTCCAGCAGCAACAGTCTGGCATGGATTTCAAATGCTGCAAGAAATGAAGACTGCAGGAAATACTCAGGGTGAAGAGTTTGACAGTGCTGTATTACTGACAGCTCAAGCTTTGTGTGAACTGAGAAGTGCTCATGCTATCACTGGTTTAGTGGCCTGGTGTGAACAGGTCTCTGGTCAGAAGTTCTCTTGGATGAATGGAACAATAATGAAAGCTAAGGGATGGTATGAGTCCTCAGCAACAGAAAACAAGTCAGCTGTAGAAGAGGTGTTGAACAAAGAGAAAAGCCACcaagaagaaagaaagacaacTGATGCACCTCCACCATGTACTGCTGTGACAGCATTCCTTGTTACTGAGGTTGCAGACTGTTACATGAAGTTATCATCTTGGAATGAGGTAGCAGAGTGGCAGAAGCATGTCAATAACCTGAGAAAACAATGTTCAGGCACAGAAGTACAGCATTCACTAATGGCAAATGTTGATATGAATTACGTCAAAGCTTTGAGCAAATTTGAGGAATGTGACTTCATATCAGTGCGGAACCACCTTAGATTGATCCCTGGAGCAGCACTGAACTCGCTGACTGAGAATCTGACCAAGTCTGCATGGTCTGTGAAGCTGAATCATCCGGACACAACATTTACTCCAGTCTGGGCTCCTTACAAGATTGAGCAGACAGCTGAACTATCCTTGATTCAGGCTCAGACACTGTTCTTTACGTCAGGAAATTTGAAAGCCAAGACAAAAGACAACAATGCAAAAGATCAGAAGATCATTCAAGCCATCAAGGAATGCATCCATCATGCCACATCACTGTCTGAAGGAGTGCTTAGAGTGGGAACACTGGGTTGGCCATTGGAAGTTTCTGCCTCTCACATGACTCAGCTGCAGTTTGCTACTACTTTAGAGAATATCTTGGAGACAGCCCTTCATCAGgagGATGTATCTCCATCATTTCTTCAAGGAAATGGAACTTTCACTATAAATCACACCCAGCATGACTGTGCAGTTCTGATCAAGGCCTTAAGGTTTTGCGCAAACCTTCATTATGTTGCCTCTTCAATGGGAAAATATCAGGATCTTATGAAGAGTGAACTGGTCTCATTACAGTTGGCAGCAGCGAAACTTGCACGAAAGCATCACAACTATAATCTTGCACAAAGGCTTTTAGTGAAACAAGTTTCTTTGCTTGGAAATCCAGTGAAGATTCTGCAAGATTCAAACTGCAGTAAGAAACAATTTCTTGAACCATTAATGGAAAGCTTGAATGATCCATCTTTGGCCTCAGCAAAACCAGTTGATGTGATGGAAATACAGAGAGAATGTTCAAAGTTAGCTTTTGCATTAGGCCACACTTCAGAAGCTGTATATTTTCTCTCTGACAGCATTGTTCAGTATTCGAACTTGGGTGATATTGACTCAAACGTTGGTGTTGTAAACTCAAGATCACTGCTCGCTCTTGCCAAATGGCTGCTTAATGACAGAAAACTGTTGACTGCAGTCACTAAAATAAACGGAAATGGTCTTGCTGTAGCAACAAAAATCAGTTCACTGTGTGAGTTGGAGGCCAATTACGTGAGCCTTGGCCACAGCACCCTTATCCCAGCACAGGATGAATCAACAGAGAGCTATTTGAATTCTACTTCTGTTCCAAGTGTGGCCTGTGGAGTGACTGATGCCGAGTCTGTTTGTGGCCAGCTTCTACACTTGGCTACCATGCAAGCACCAGACTTGGGCAAGGTCTGGTTTAATTTGGCTGGATGGTGCTATCGATGGGGAAGAAAAACGGTTGAACAGGCTAGCTCAATGGGAAATGTTGATCTCTTACCACAAGAAAAGGAAACTGTGTTACAGAATCTGCCACAGAATGCTCGCCCTGCTGAGGTGGAGTCAGTTCTGCTAGTACTGGGCCAGGTTCATGTGACAGCTTATTTCAACCAGGATGAGGATATTGGTGAAGAGGATCAGCTGTATGATGATGGAGTAGAGAACACTAAGAAGCAGCTTGTCACAGTCTGCCTAGGATTACAGGATGCCCAACCTCAGCTGATGGAAAATCTCTTGTCTGTGTGGAAAGGTGTCAGGGACAGACTCTTTAAACACTACCATTTTGCTGCCAAAGCATACTTCATGTATCTCAGGATGGGAAATGTGGATTGCGATAGATCATCTGGTGAACTAAAGAATGAGAATGAAAACAAACATGCTTCTAAAAACAGTGATGATGACAGTAATGTAACCGCCACCTTGAGATTACTGCGTCTTCTTGTGAAACATGCTGGTGAGCTCCGTAGTGAACTGGAGGAGGGACTGGTGAATACTCCTACAAGACCTTGGAAAGACATAACTCCTCAGCTTTTCTCACGACTGAACCACCCAGAAAGCTATGTACGGCAGAGTGTCTCTGAGTTGCTGTGCCGTGTGGGTCAAGATGCACCACACCTGATAGTCTATCCTGCAGTGGTTGGGTGTTCTACGTCGCTTCCTAAGTACTTGCTGAACAAAGGCAAAGAAGGAGAGGGTCTTCTTCCACTTCTTGTGTCAACTTCCACTGACTCAGCAGAAAATAGTCAAAATCAAGGCTGCCAACCCTGTGATGCCCAAGGCAGCAAGACAGAGAGTGACGCATTGACCAGTTGCTACCAGACCATCGTTGAATCTATCAGAACGCACAATCCTCAGCTAGTATCTGACCTGCAGGGTTTTATCATGGAGTTACGCAGGATCACTCTACTGTGGGAAGAGTTGTGGCATGGCTCACTTATGCAGACTCATCATGACGTAACACGCCGGCAGCAACAACTTGAGGACGAGATCAAGAGAGTCAATGGCAACCAGAATCTGACCAATCAGCAGAAGACGACACTTATCAGGGAGAAACATATTGCTATCATGAAACCCGTTGTTTTTGCATTAGAACAGTTGAACAAAATAACCTGTCAAGAGACTGCCACACCTCACGAGCAATGGTTCCAGATGAGCTACAGTGATGCTATTCAAGGAGCACTGGAAGCGTTACAGAGCCCTCCTGATCCTGCTGACCACAGATCCAGCTGGGAGCCATTTAAACAGCTATTACAAGCATTCCAGGCCAGATCTCAAAAGCGTTCAGCTTACACCCTTTACATGGATGAGATCAGCCCTTCACTTTCCAGTCTAAAAGCTTCTGCAGTCTACATGCCAGGCCAGACACATTTCAGTGGAAAGATTGTCACCATTGATTCTGTAATCAGAGAAGTCAACATTCTGCCAACCAAAACCAAGCCCAAGAAGCTGGTGTTTGTCGGATCCGATGGGCAGagGTACACATATTTATTTAAAGGACTTGAAGATCTCCATCTTGATGAAAGAATCATGCAGTTCCTCTCCATCTGTAACAACATGTTTGCCAGAGTTGACAGCCACAATTCTCCTCAGTTTTGTGCTCGCCATTACTCTGTCACGCCTCTTGGTCCCCGGTCAGGCCTTATTCAGTGGGTGGATGGCGCTGTTCCTGTGTTTGCCTTGTTCAAACGGTGGCAGCAAAGAGAAGCCTTGGCCATCGCACTGGTGAAGTCTTCACAGGGTGCAAATCAACCCCCACCTCCACCCATGAAACCAAGTGAACTTTACTACAGCAAAATTACTCCTGCCCTCAAAGAGAAGGGTATCACAGACCTGTCCAACAGAAAGGATTGGCCTCTAAGTGTGATGAGACATGTTTTGGAGGAACTCATGAAGGAAACTCCCAATGACCTGTTAGCTAAAGAGCTGTGGTGTTCTAGTACCAGTGCAGCTGAGTGGTGGCAGATGACTCAGAGTTATGCTCGATCCACTGCAGTCATGTCTATGATAGGTTACATTATTGGCCTTGGAGACAGACATCTGGATAACATGCTGGTAGATTTCACCACAGGGGAGGTTGTCCATATTGACTACAATGTGTGCTTTGAGAAGGGTAAAGGACTGAGAGTTCCTGAGAAGGTTCCATTTAGAATGACACCTAACCTGGAGACAGCCCTGGGAGTGACTGGAGTGGAGGTAATATTTGCAAACTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15785 all species →	SMG1	Serine/threonine-protein kinase smg-1	Family	Interproscan
PF00454 all species →	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031559 all species →	Family	Serine/threonine-protein kinase SMG1	Interproscan
IPR050517 all species →	Family	DNA Damage Response and Repair Kinase	Interproscan
IPR000403 all species →	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR018936 all species →	Conserved_site	Phosphatidylinositol 3/4-kinase, conserved site	Interproscan
IPR039414 all species →	Domain	SMG1, PIKK catalytic domain	Interproscan
IPR036940 all species →	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan
IPR014009 all species →	Domain	PIK-related kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11139 all species →	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_55694.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.