Gene detail

Detailed information of evm.model.contig_55797.3 in Platygyra sinensis

Genomic Location: contig_55797:23117...35095
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_55797.3

ATGAGGAACTCATCTTCTCAATTTAAGCGAGCGTTTTCGCTGAAAGACGGCGACATGAACGGTGTTAATGGCGAGTCTCCTCTGCACAATTTTGTAAAAGCCAAGCAGAAGATTAACTCCACTTTTGGTGACATTGGGAGATATCTTGAGAACTGTAATAACTTTCTGGCGGATTGTAACATATCTGATGATAATAACGAAGAAATCAAGAAGTTTTCTACCGAGGTTTCAGGCTATTTGGAACAGGTTTCAAGCATCTCTGAGGTGTTAGCAAGAGATCAGATGAAAGTGGCTTTCTTTGGACGTACAAGTAATGGAAAGAGTACAGCAGTGAATGCTATGCTACAAGACAAGATCTTACCAATGGGCATTGGTCATACAACAAACTGTTTTCTGAGTGTTCATGGCTCTGATTTACCAGACCCGTATATTTTAATTCCAGAGAGCAACGAGAAAAAGAATGTCAAGTCTTTAGCTCAACTTGCTCATGCTCTGTGTGATGAAAAGCTTGACCACAGCAGTCTTGTTCAAGTCTTCTGGCCAAAATCAAGATGTAAAATGTTGTCTGAAGATGTTGTTCTGGTTGACAGTCCTGGTATTGATGTCAGTCCAGATCTTGATTTGTGGATTGACAAACATTGCTTAGATGCTGATGTGTTTGTATTGGTTGCCAATGCTGAGTCTACACTCATGGTCACGGAAAAGAATTTCTTCCACAAAGTCAACCAGCGTCTTTCACGACCAAACATCTTCATTCTGAACAACAGATGGGATGCATCTGCTTCAGAACCTGACACAATGGAGCTAGTAAAAAATCAACACCTGAATAGGAACATCGCCTTCCTTGCTGATGAGCTTAAGTGTGTGGACAGAGCTCAAGCAGAGGACAGAGTGTTTTTTGTGTCTGCGAAAGAGACTCTAATGACAAGAATGCAGAAACACCAGGGTATGCCTCAAGGAGGTGGTGCCATTCATGTCGAGGGATTCCCTGCTCGTCAACTGGAGTTTGAGAACTTTGAACGTAAATTTGAGGAATGTATTTCCAAGTCGGCCATCCAGACCAAGTTTGAATCTCATGCAGCCAGCGGGTTGAAAATCACCAACATGGTGAAGGCCCTTATGGAGCAGATTGTTGGGCGTGCCTTTCAGCAAAGAACGAAACTGGAGAAGGCTAAGAAAGAACAGGAAGACCGACTGGAGTATGTGAAGGAACAACTGGAGATCTGCAGTCATGATTCCAAGAGACAGATCAAGGAAATCACAGCTAAAGTGGAAGCACAGGTAACTGAAGCCATGACAGAAGAGATTGGTCGATTGGGATTACTAGTGAATGAATTTGATCATCCTTTCCACCCTCATCCTGGCTTCCTTAGAACATATAAAAAGGAACTGTACAGTCACCTGGAGAGAGGCCTGGGAAGGAATATGACAGCTCGGTGCTCTAATTCTCAAACTCAAGTCATTTGTGATGCCCAGAGAGACATGGCAGATCGTCTCCGTGGTCTTCTCCCGCCAGAATCACCCGAGGTATCACTTGAACCTGGAACACCAGCTCTTGATTTCCAAGCAAGCTACAAATTGGATGTCCCAAGTTTGTGTAGTGACTTCCAGGAAGACATAGAGTTTCACTTTACTCTGGGATGGCAGGCGATATTAAGAAAGTTTCTTGCACCTCATAACGCTGGTCTGGCCATTGCTTTGGGAGCTAATATTCAGAGAAACGTCCAGAGTCTAGTGCCAACTGCCCAGCATAATACTCAATCGTATTCTACAGAGGGAAGGCCTGGAGCGAGTGCCCAAACCTGCTCGTCACGTGACGTCACGAGACGTTATGAGGGTGATGACGTCACTTTAGCCGTCATTCAAGGGCTTGCTTCGCTGACGTCGCGCACGGGTACTCTGGTAGTCATAGTTGGTGGATTGATCTGGAAGACCGTGGGCTGGAAGTTTATCGCCTTGTGTGGCGGTCTGTACAGTGGTGTGTATGTAATTGAGAGGCTACGCTGGACCAATAGTGCTAAAGAGAAAACCTTCAAACGTCAGTTTGTGGAGTACGCTTCTGAAAAGCTTCAGTTAGTGGTCAGCTTTACAAGTGCAAACTGCAGTATACAAGTGCAACAAGAATTAACGTCGACCTTTGTTAAGCTCAAGTCGCTGGTACAGAGAGCGAAAGAGACGCTTGAAGAAAACATCATTGAATTGTACAAAGAAATCACCAGACTTGAGAAGATCGAGAATGATGCCAAAATATTAAGGAACAAAGCTAGTTGGTTTGAAAGCGAGTTGACTCAGTTTGTGGCAGAATTTGGTTTGGAAAAGAGCAAGATGTAA

Transcript

evm.model.contig_55797.3

ATGAGGAACTCATCTTCTCAATTTAAGCGAGCGTTTTCGCTGAAAGACGGCGACATGAACGGTGTTAATGGCGAGTCTCCTCTGCACAATTTTGTAAAAGCCAAGCAGAAGATTAACTCCACTTTTGGTGACATTGGGAGATATCTTGAGAACTGTAATAACTTTCTGGCGGATTGTAACATATCTGATGATAATAACGAAGAAATCAAGAAGTTTTCTACCGAGGTTTCAGGCTATTTGGAACAGGTTTCAAGCATCTCTGAGGTGTTAGCAAGAGATCAGATGAAAGTGGCTTTCTTTGGACGTACAAGTAATGGAAAGAGTACAGCAGTGAATGCTATGCTACAAGACAAGATCTTACCAATGGGCATTGGTCATACAACAAACTGTTTTCTGAGTGTTCATGGCTCTGATTTACCAGACCCGTATATTTTAATTCCAGAGAGCAACGAGAAAAAGAATGTCAAGTCTTTAGCTCAACTTGCTCATGCTCTGTGTGATGAAAAGCTTGACCACAGCAGTCTTGTTCAAGTCTTCTGGCCAAAATCAAGaTGTAAAATGTTGTCTGAAGATGTTGTTCTGGTTGACAGtcCTGGTATTGATGTCAGTCCAGATCTTGATTTGTGGATTGACAAACATTGCTTAGATGCTGATGTGTTTGTATTGGTTGCCAATGCTGAGTCTACACTCATGGTCACGGAAAAGAATTTCTTCCACAAAGTCAACCAGCGTCTTTCACGACCAAACATCTTCATTCTGAACAACAGATGGGATGCATCTGCTTCAGAACCTGACACAATGGAGCTAGTAAAAAATCAACACCTGAATAGGAACATCGCCTTCCTTGCTGATGAGCTTAAGTGTGTGGACAGAGCTCAAGCAGAGGACAGAGTGTTTTTTGTGTCTGCGAAAGAGACTCTAATGACAAGAATGCAGAAACACCAGGGTATGCCTCAAGGAGGTGGTGCCATTCATGTCGAGGGATTCCCTGCTCGTCAACTGGAGTTTGAGAACTTTGAACGTAAATTTGAGGAATGTATTTCCAAGTCGGCCATCCAGACCAAGTTTGAATCTCATGCAGCCAGCGGgttgaaaatcaccaacatggTGAAGGCCCTTATGGAGCAGATTGTTGGGCGTGCCTTTCAGCAAAGaacgAAACTGGAGAAGGCTAAGAAAGAACAGGAAGACCGACTGGAGTATGTGAAGGAACAACTGGAGATCTGCAGTCATGATTCCAAGAGACAGATCAAGGAAATCACAGCTAAAGTGGAAGCACAGGTAACTGAAGCCATGACAGAAGAGATTGGTCGATTGGGATTACTAGTGAATGAATTTGATCATCCTTTCCACCCTCATCCTGGCTTCCTTAGAACATATAAAAAGGAACTGTACAGTCACCTGGAGAGAGGCCTGGGAAGGAATATGACAGCTCGGTGCTCTAATTCTCAAACTCAAGTCATTTGTGATGCCCAGAGAGACATGGCAGATCGTCTCCGTGGTCTTCTCCCGCCAGAATCACCCGAGGTATCACTTGAACCTGGAACACCAGCTCTTGATTTCCAAGCAAGCTACAAATTGGATGTCCCAAGTTTGTGTAGTGACTTCCAGGAAGACATAGAGTTTCACTTTACTCTGGGATGGCAGGCGATATTAAGAAAGTTTCTTGCACCTCATAACGCTGGTCTGGCCATTGCTTTGGGAGCTAATATTCAGAGAAACGTCCAGAGTCTAGTGCCAACTGCCCAGCATAATACTCAATCGTATTCTACAGAGGGAAGGCCTGGAGCGAGTGCCCAAACCTGCTCGTCACGTGACGTCACGAGACGTTATGAGGGTGATGACGTCACTTTAGCCGTCATTCAAGGGCTTGCTTCGCTGACGTCGCGCACGGGTACTCTGGTAGTCATAGTTGGTGGATTGATCTGGAAGACCGTGGGCTGGAAGTTTATCGCCTTGTGTGGCGGTCTGTACAGTGGTGTGTATGTAATTGAGAGGCTACGCTGGACCAATAGTGCTAAAGAGAAAACCTTCAAACGTCAGTTTGTGGAGTACGCTTCTGAAAAGCTTCAGTTAGTGGTCAGCTTTACAAGTGCAAACTGCAGTATACAAGTGCAACAagAATTAACGTCGACCTTTGTTAAGCTCAAGTCGCTGGTACAGAGAGCGAAAGAGACGCTTGAAGAAAACATCATTGAATTGTACAAAGAAATCACCAGACTTGAGAAGATCGAGAATGATGCCAAAATATTAAGGAACAAAGCTAGTTGGTTTGAAAGCGAGTTGACTCAGTTTGTGGCAGAATTTGGTTTGGAAAAGAGCAAGATGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04799 all species →	Fzo_mitofusin	fzo-like conserved region	Family	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006884 all species →	Domain	Fzo/mitofusin HR2 domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan
IPR027094 all species →	Family	Mitofusin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10465 all species →	TRANSMEMBRANE GTPASE FZO1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0008053 all species →	Biological Process	mitochondrial fusion	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0031306 all species →	Cellular Component	obsolete intrinsic component of mitochondrial outer membrane	Interproscan
GO:0051646 all species →	Biological Process	mitochondrion localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06030	MFN2, FZO1; mitofusin 2	EC:3.6.5.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.