Detailed information of evm.model.contig_55807.1 in Platygyra sinensis

Genomic Location: contig_55807:356...13763
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16898
all species →		TOPRIM_CC-terminal associated domain of TOPRIMFamilyInterproscan
PF00521
all species →		DNA_topoisoIVDNA gyrase/topoisomerase IV, subunit AFamilyInterproscan
PF05485
all species →		THAPTHAP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013759
all species →		Homologous_superfamilyDNA topoisomerase, type IIA, subunit B, C-terminalInterproscan
IPR031660
all species →		DomainC-terminal associated domain of TOPRIMInterproscan
IPR001154
all species →		FamilyDNA topoisomerase II, eukaryotic-typeInterproscan
IPR006171
all species →		DomainTOPRIM domainInterproscan
IPR001241
all species →		FamilyDNA topoisomerase, type IIAInterproscan
IPR002205
all species →		DomainDNA topoisomerase, type IIA, domain AInterproscan
IPR013758
all species →		Homologous_superfamilyDNA topoisomerase, type IIA, domain A, alpha-betaInterproscan
IPR006612
all species →		DomainTHAP-type zinc fingerInterproscan
IPR050634
all species →		FamilyDNA Topoisomerase II EnzymeInterproscan
IPR013760
all species →		Homologous_superfamilyDNA topoisomerase, type IIA-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10169
all species →		DNA TOPOISOMERASE/GYRASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003918
all species →		Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan
GO:0006259
all species →		Biological ProcessDNA metabolic processInterproscan
GO:0000712
all species →		Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0000819
all species →		Biological Processsister chromatid segregationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.contig_55807.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP