Gene detail

Detailed information of evm.model.contig_56647.1 in Platygyra sinensis

Genomic Location: contig_56647:399...5348
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18116 all species →	SNX17_FERM_C	Sorting Nexin 17 FERM C-terminal domain	Domain	Interproscan
PF21271 all species →	SNX17-31_F2_FERM	Sortin nexin 17/31, FERM domain, F2 lobe	Domain	Interproscan
PF21273 all species →	SNX17-27-31_F1_FERM	Sortin nexin 17/27/31, FERM domain, F1 lobe	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028666 all species →	Domain	Sorting nexin-17, FERM domain, N-terminal subdomain	Interproscan
IPR040842 all species →	Domain	Sorting nexin-17/31, FERM domain	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR037831 all species →	Family	SNX17/27/31-like	Interproscan
IPR048767 all species →	Domain	Sortin nexin 17/31, FERM domain, F2 lobe	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR048763 all species →	Domain	Sortin nexin 17/31, FERM domain, F1 lobe	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12431 all species →	SORTING NEXIN 17 AND 27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:1990126 all species →	Biological Process	endocytic recycling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_56647.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.