Gene detail

Detailed information of evm.model.contig_57030.4 in Platygyra sinensis

Genomic Location: contig_57030:17119...31461
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_57030.4

ATGATGGAGGTGGAGCTAGGAGGGGTAGAGGACATAGACGGCATCCCTCAGGCTTGTCAGGAAAAGAGATTGGCCTCTGGTATGCAAGAAAAGGACATGAAAAGAAAGCAAGAAAGGAACTCAAGCAGTCCCAGTCCCTTGAGCGAGAAAAGCCCGGATGAGTATCGTGCTTTTGTTACAATGGACAGCCATCATGAGGAGAGGATAAGTCAGCTTCTAGGAGAATTAAGAAAAAATGAGAGTAGTACCAGTACTAGTACTAGTACTAGAGTTAGTGATGACAGCAGAACACAAGCTGGCACGTCAGCCTGTAGGGATTGGTATGATGCTCCTCATGAAGAGCAGAGTCATGTACATGCTGATGGAGGATCATACACTAACAAGAGCAATCAAGAAATACAAGATGTAACAGACTCGAAGTTTCAGCATCAGTTGGCAGACGAAGATGATTGCTTTCCAAATCAGATGTATGTGTCTGATAGAGAAGGAAGCAAGCAATCAACTTCCAAGTATATTTTTAACATGGACGTACCTTTGCAGAAGGACAGTGCTTTTGATCAACATTTAAAGGAAGAACAGCAGAAGAAGGTCATGTCAGGCAGTACAAGATATAATACCATGCAGGAATTCCGTAAAAGATTACCAACGTATGAGAAGAAAGCGGAGTTGTTACACCTTATTAACTCAGAGCAGGTTTTGGTTATCAGTGGAGAGACTGGATGTGGCAAAACAACTCAGGTTGCTCAGTTTGTCTTGGACGATGCTATTGAACGCGGCTGTGGATCAACATGCCGAGTGATCTGTACTCAACCCCGGAGGATCAGTGCTATTTCTGTTGCAGAGAGAGTTGCTTCAGAGAGGGATGAGGAGTGTGGTGAAAATGGTAGTGTTGGATATCAGATCAGATTGGAAAGTGAGGCAGACAGTGAGGAGGAGGAAGATGATGACGATGATGATGATGAAGATGGTGATGATGATGATGATGATGATGATGATGAGGATGAGGATGAGGATGGAGAAGATGATGATGATGATGATGATGATGAGAGTGAGCAAATAAATGATGATGATGATGATGATGATGATGATGATGATGATACTGGTGGTGTTGGTGATGATGATGATAATGAGAGTGATAATACTGGTGGTCTACCTCGGGAACAAGGTTCTATCCTTTATTGTACAACAGGAGTGCTTTTAAGATGGCTCATTGATGATCCCCTCCTTCATCAGTGCAGTCACATCATTCTTGATGAGATTCATGAAAGAGATATTTTGTCAGATTTCCTCATCATCATTATCAGAGATCTTTTGAGAAAAAGAGAGGGGAGGTGTGGTGGCCTCGTGGTTAGTGTGCTCGACTCTGGAGAGAGTGGTCCAGGATCGAGCCCTGGTGGAGACATTGTGTTGTGTTCTTGGGCAAGACACTTTACTCTCACAGTGCCTCTCTCTCCACCCAGGCCTGACTTGAAAGTGATCCTTATGAGTGCCACATTGAATTCAGAGATGTTCTCTGCCTACTTTGGTAACTGCAAAATGGCTCACATTCCTGGCTTCACATATCCCGTTCAAGAGCTTTACCTGGAAGAAATCATTGAAAAGACAGGGTATGAAGTTCAAGAAAAAGCTGCTAGCTTTGTCAGGAAACAACCAAAGTGGAAGCAGTACAGGGACAGAGGGACTAAAAGCTTTGCAAAAGACAGAAGGTTGGAAAAATCTATGGCATGGATGGAAGAGAGTCAGGAAGATGAGAAGGAGTTGGAATGGCAGCAGTATCTTTACTCACTTAGAGACAGATATTCACCAAGAACAATCACAACGCTTCAAAACATGGATCTGGAAAGGATCGACTTGGAACTTTTGGTTCGAGTGATTTCTCACATCTCACTTCACATGGAGGTCTTTGACCGTCCTCCTCAAGGTGTCAGGAAAATAGTGATTGCCACTAACATCGCTGAAACCAGTATCACTATTGATGATGTGGTGTTTGTTGTGGATGCTGGCAAAGTGAAACAAAAGACTTATGATGTAAACAACAAAATTGCCTGTCTACAGCCGGTGTGGATCAGTAAAGCTTCATCACGGCAAAGAAGAGGCCGGGCTGGAAGAGTACAGCCTGGGTACTGCTTTCATTTGTTTACCCAACCTCGTGCCCAGTCCCTTGACGATTACCAGCTGCCAGAGATGCTGCGAACCCCTCTTGAAGAACTTTGCTTGCAGATCAAGATTCTTCAACTGGGCATGATACGACCTTTTCTGTCCAAAGCCTTGCAGCCTCCTGAGGAGCAAGCAGTCATCAATGCTTTAGAAGTTCTTCGTCAACTTGTAAGTATGCTACAGCGTCGGAAAGAAATCAGCGCGCCTTGCCTGGAAAAACCTACTTTTCACTTTTGTTTTTAG

Transcript

evm.model.contig_57030.4

ATGATGGAGGTGGAGCTAGGAGGGGTAGAGGACATAGACGGCATCCCTCAGGCTTGTCAGGAAAAGAGATTGGCCTCTGGTATGCAAGAAAAGGACAtgaaaagaaagcaagaaagGAACTCAAGCAGTCCCAGTCCCTTGAGCGAGAAAAGCCCGGATGAGTATcGTGCTTTTGTTACAATGGACAGCCATCATGAGGAGAGGATAAGTCAGCTTCTAGgagaattaagaaaaaatgagaGTAGTAccagtactagtactagtactagagTTAGTGATGACAGCAGAACACAAGCTGGCACGTCAGCCTGTAGGGATTGGTATGATGCTCCTCATGAAGAGCAGAGTCATGTACATGCTGATGGAGGATCATACACTAACAAGAGCAATCAAGAAATACAAGATGTAACAGACTCGAAGTTTCAGCATCAGTTGGCAGACGAAGATGATTGCTTTCCAAATCAGATGTATGTGTCTGATAGAGAAGGAAGCAAGCAATCAACTTCCAAGTATATTTTTAACATGGACGTACCTTTGCAGAAGGACAGTGCTTTTGATCAACATTTAAAGGAAGAACAGCAGAAGAAGGTCATGTCAGGCAGTACAAGATATAATACCATGCAGGAATTCCGTAAAAGATTACCAACGTATGAGAAGAAAGCGGAGTTGTTACACCTTATTAACTCAGAGCAGGTTTTGGTTATCAGTGGAGAGACTGGATGTGGCAAAACAACTCAGGTTGCTCAGTTTGTCTTGGACGATGCTATTGAACGCGGCTGTGGATCAACATGCCGAGTGATCTGTACTCAACCCCGGAGGATCAGTGCTATTTCTGTTGCAGAGAGAGTTGCTTCAGAGAGGGATGAGGAGTGTGGTGAAAATGGTAGTGTTGGATATCAGATCAGATTGGAAAGTGAGGCAGACAGTGAGGAGGAGgaagatgatgacgatgatgatgatgaagatggtgatgatgatgatgatgatgatgatgatgaggatgaggatgaggatggagaagatgatgatgatgatgatgatgatgagagtGAGcaaataaatgatgatgatgatgatgatgatgatgatgatgatgatactggTGGTgttggtgatgatgatgataatgagaGTGATAATACTGGTGGTCTACCTCGGGAACAAGGTTCTATCCTTTATTGTACAACAGGAGTGCTTTTAAGATGGCTCATTGATGATCCcCTCCTTCATCAGTGCAGTCACATCATTCTTGATGAGATTCATGAAAGAGATATTTTGTCAGATTtcctcatcatcattatcagaGATCTTTTGAGAAAAAGAGAGGGGAGGTGTGGTGGCCTcgtggttagtgtgctcgactctGGAGAGAGTGGTCCAGGATCGAGCCCTggtggagacattgtgttgtgttcttgggcaagacactttactctcacagtgcctctctctccacccagGCCTGACTTGAAAGTGATCCTTATGAGTGCCACATTGAATTCAGAGATGTTCTCTGCCTACTTTGGTAACTGCAAAATGGCTCACATTCCTGGCTTCACATATCCCGTTCAAGAGCTTTACCTGgaagaaatcattgaaaagaCAGGGTATGAAGTTCAAGAAAAAGCTGCTAGCTTTGTCAGGAAACAACCAAAGTGGAAGCAGTACAGGGACAGAGGGACTAAAAGCTTTGCAAAAGACAGAAGGTTGGAAAAATCTATGGCATGGATGGAAGAGAGTCAGGAAGATGAGAAGGAGTTGGAATGGCAGCAGTATCTTTACTCACTTAGAGACAGATATTCACCAAGAACAATCACAACGCTTCAAAACATGGATCTGGAAAGGATCGACTTGGAACTTTTGGTTCGAGTGATTTCTCACATCTCACTTCACATGGAGgTCTTTGACCGTCCTCCTCAAGGTGTCAGGAAAATAGTGATTGCCACTAACATCGCTGAAACCAGTATCACTATTGATGATGTGGTGTTTGTTGTGGATGCTGgcaaagtgaaacaaaagACTTATGatgtaaacaacaaaattgcCTGTCTACAGCCGGTGTGGATCAGTAAAGCTTCATCACGGCAAAGAAGAGGCCGGGCTGGAAGAGTACAGCCTGGGTACTGCTTTCATTTGTTTACCCAACCTCGTGCCCAGTCCCTTGACGATTACCAGCTGCCAGAGATGCTGCGAACCCCTCTTGAAGAACTTTGCTTGCAGATCAAGATTCTTCAACTGGGCATGATACGACCTTTTCTGTCCAAAGCCTTGCAGCCTCCTGAGGAGCAAGCAGTCATCAATGCTTTAGAAGTTCTTCGTCAACTTGTAAGTATGCTACAGCGTCGGAAAGAAATCAGCGCGCCTTGCCTGGAAAAACCTACTTTTCACTTTTGTTTTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002151 all species →	Molecular Function	G-quadruplex RNA binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14442	DHX36, RHAU; ATP-dependent RNA helicase DHX36	EC:5.6.2.6	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.