Gene detail

Detailed information of evm.model.contig_57412.2 in Platygyra sinensis

Genomic Location: contig_57412:10191...14689
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_57412.2

ATGGGCATCAGCAGATCGGCGTCAACGGTGATAGCGTATGGCATGAAGGAGTATGGCTGGTCGTTAGGTGAGACGATGAAGTATGTCAAAGCTCGAAGGAGTGTCGTGCAGCCGAACGCTGGGTTCTGGAAACAGCTCATTACGTATGAAGGAATTTTGATTTCCAGCAAACGGCGCGACCATTGGGCCGATGCAGAGGTGTCAAACAGCGCCACAGCTGGAAAGAAGCGGAGAGAAAAATCTCCTAGCTCTCCTAAAGAGACTGACAAAAAGTCCCAGATGGCTCTCCATGTAGAAAGCGTAGACACTGTTGATAATGCAGCGATAGAAACTGAGTCCTCTTTAAAACACAAGGAGTCTTCCGACGAAGATATCGAAGAACTCTGCGTTCTTCGGGCGGCGTCGGAGAGTACTATTGAGCTCGTCGAAGGCACTTCGCTGGAAAGGAACAAAGTGGAACATGTGCCCGCGACGAGTTCACCAATTGGTCCGGACCCAGAGAGGACGGTTGAGTCCTGTAAAGAGGCCCTTGAGAAGCCAAATTATGTACCACCCAGTTGTCACGCTTCGGAAATCCCTATCAGGGCTTCGCTACAAAGAGTAAATTCAGATCCTTCTTTGTCAAATGATGAACAAAAGAAGAAAGTAAAGGATGAGAAATCTATCGGGAACTTTCGTAGGTCATGCTCTTTACGAGAGCGTGGAACAAAGAAATTGCAAGAATTGCAGTCGAGAGCAAGGTCCGCAAGCGACGAAAATCTCAAGGAATTCGAGCGAAAAAAGAATCAAATTCTTGGCTTGGAAAAACGAGAGACGAGCGATTTGCAAGACGCAAAGAACACTGTTGAAGACCTCCTACCGAGCGACTTACATGGGGTACTTGAAAGCGGATTTGTCAAACGATATTGGAGAAAGTTTGAAGGTGTCGATGATTTTTCAGAGCTTGAGGGTAATGCCGCTGTGACATCGAAGGAAGAAGTAGATGTTGAGTGTGCGCTTGCAGAAGGCGAGAAGATCACAGAAGAGGAACAAGACGAGAGTATGCCAAACGAAGAACCCGAACCAGGCGTTGTAAAGAAGCACAAAGAAGGTTACGAACTGAAGCATCGGGAGAGTTCGAAGAGGCGGGCGTTGCTTCAGCGAGGCGGTAGTGATGAAAGGAAAAGCGCGAAACAAGAAGGAGCCGAAGTCGAAGGTTCTGTTACTGTTGATGGTGAGTCAGAGTCAGTGCAAACCTCAGGAGAATTGGAAGACGAGCTAAGAGGTGTTGACGTCGAAGCGCTTGTTAAAAAGGTTAACGAGGATATGAAGAAGGAGGTGACTGTTAGGAGATTATCTGCTTCAAAGAAAGAACAAGAGCTACGAGAATATGTTGAAAAAGCAGGGGAACGAATGAAGAACTCTCCGGTTGATGCCGAAGACGGAACCGTACCGAAAAACAAGGGCACTGAGGCTAATGAGGTAGATTCTGAACAACTACGTGAAGAGTCCTTTACTTGGAAAACTAAACGAAACACTCTTGTCTTTGTACTTGAGGAAAATGACCATGATTTGCCGTCAAACGATTCGCTGTTAACAGGAACATCCGAAAGCAGGCAACCAGTTGTCTCGAAGCCCTCTGTTGCGCAAAATATGAGTGCTATTGTAGATTCCGTTATTGAAGGGAAATTACAACCTTTGGACCAAGGGGAGGCAGAGAAAGGAACTGGTGACCAACGGACCAAAGAAGTCAATCAAGAAATAGGTTTGTCTTTATCAAAGGAGAAAACAAAAAGCGCAGACGCATATACGGTGCAGGAAAACAGTACTATTTCACAAGACGCCGCGGAGCCTTCAGAGATCTCTACAGAAAAAGCAGGATTTTCTGAATTGCTACAGGACACAAAAGACGAACAGAGAGAGCAAACTCCAGAAAACAGCCCTCAGAAAGGTCTAGTAAAACGACACACGCTGTTAATTGAAGGAAAGCTGCAGCCATTGGATCAAGAGATTGAAAAAGATGTCGAGAGACCAGATGGACAAGAAGGCCATTTTTCAGTCGGTCAAAAAGCGTCTTGGTGTCTTTCAGAAGATGAAACGAACAGTGCGGCTCTCCATACAGAACGAACAGAGGTGAATGTCGTACAAAATTTTAATTCTGATATGGAGGCCAAAGAGAAGAGTAATTCAGAAACAGCAAAGACCTGTGAGCTGTCAGAGGACGGAGAAAGCACAGAGAGCGGACCCGACACAGACAACATCCCTCCGAAAGGTCTTGTGAAGCGTCACACGTTGTTGATCGAGGGGAAAATACAGCCTTTTGATCAAGAGTTCGAGAAGAAAGTGCAGAAAGAGACTGGGAACGAAACTGAACGTGCAGATGACCAGGACGCATGTGCATCTCCTTTGAAAGGGGATAAACGTGTGGTTATCGATGGGCTGAGCGACACGAAAGACTTGGAAATCGACGTGGAAACTGGCGCCTCGAGGGTAAAAGACCCCTCTGTATTGCTGGAGGACATAGAAGACAAGTTGAGTGAACAGGATACGGAGAACAAGCTTCAGAAAGGTCACGTGAAGCGTCACACGCTGTTGATCGAGGGAAGACTACTGCCACTAGATCAAGAGTCAGACAAAGATGTTGAAAAAGACGACGGTAAAGAAAGCGAGTTCGTTCTTGACAAGGAGGCCGTTTTGCCAGTTGAAGATCAAGGACAATTGCGATATCAAATTGAGCGAACAAGTGATTCGGAAGTTGAGCAATGTGTTGAAGAAAATCAAGACAACGAGAGTGTTTCTGGTTTGGTCAAACGAGAAAAACTACGTATTGAGGAGCGGCTTCAAACTACATCGACGGAGTCCAAACAAGATTCAGAACAGGCGATGACGGGCAGTGACAATACAGTGCTCGAAACTGTTGATGGAGAAGAAAATTGTCAGGAAGTCGACACAACGGAAAAGTCAAGCGAGGAGATCGAAGAGATAAATGGAGAAGAAGAGCAGAGTGAGATAGCTGTGGACACGTCAAGCGTGGTTAGAGTAAGGGAACAGGCTCAGCATTTGGAAGGCATTATTCGTGTAACACAAGATGGGGAAAAGGTTAAAAGCCCATCATCAAAAGATGGCGATCTTAAAACAAGCGATGAATCTCCGAAATTTTTCATAGTTCCACGTGCGGGTTCCGAGGAGAATATAGATGAGGGAAACGAGGTGAACACTGTGGAGAAAATCAGCGAAGAAAAAATGGATTGCTTGAGCGGCAGTGCGGTCAACTTTGCTCTTTTAAAGCCTCAAGAAAAATCAGATTCGGAAAAGGAGAACCTTGAGTTGGACAATAAAAACTTTGTAGATTGGAACGTTGCGAATGTAAAACAAAGAAGGCAAATCTTTGAAAATATTGTACGGAATTACGACATGGACAGATTGAAAGGTGACGAAGAAAGCGAAAACAAAAGCAACTCGCTTCGTCGCCACGAATCAATGCCGAAGATGACTCGTGCAACCGAAAAGCCTGCTTTTCGTCGTCGGTCGGTTTCGGATGTAACTGCAACGGTATCGTCGGGTTCCGATCGGAAAGTTGGCTACACCATTGAATTCAGGAAAAGAATTGATGGTTCGTCGAGTTCGTCATCATTGCCTCGTGATTGGAGCCCTCTTGAACACAGACAACGACAGGAAGACAAGGACGTATTTTCCCCTGAAATTTCGCGAAAAGACAAACTCAAGAAAAATGCCAGTGTAGAATTTAACGATCGCCGGGCCACTAGTCAAACCGTTAAGGAGACTTTTCAAGTTTTAGATTCTAAGAATCAAAGAAACATTAGTAACATTAGTTAG

Transcript

evm.model.contig_57412.2

ATGGGCATCAGCAGATCGGCGTCAACGGTGATAGCGTATGGCATGAAGGAGTATGGCTGGTCGTTAGGTGAGACGATGAAGTATGTCAAAGCTCGAAGGAGTGTCGTGCAGCCGAACGCTGGGTTCTGGAAACAGCTCATTACGTATGAAGGAATTTTGATTTCCAGCAAACGGCGCGACCATTGGGCCGATGCAGAGGTGTCAAACAGCGCCACAGCTGGAAAGAAGCGGAGAGAAAAATCTCCTAGCTCTCCTAAAGAGACTGACAAAAAGTCCCAGATGGCTCTCCATGTAGAAAGCGTAGACACTGTTGATAATGCAGCGATAGAAACTGAGTCCTCTTTAAAACACAAGGAGTCTTCCGACGAAGATATCGAAGAACTCTGCGTTCTTCGGGCGGCGTCGGAGAGTACTATTGAGCTCGTCGAAGGCACTTCGCTGGAAAGGAACAAAGTGGAACATGTGCCCGCGACGAGTTCACCAATTGGTCCGGACCCAGAGAGGACGGTTGAGTCCTGTAAAGAGGCCCTTGAGAAGCCAAATTATGTACCACCCAGTTGTCACGCTTCGGAAATCCCTATCAGGGCTTCGCTACAAAGAGTAAATTCAGATCCTTCTTTGTCAAATGATGAACAAAAGAAGAAAGTAAAGGATGAGAAATCTATCGGGAACTTTCGTAGGTCATGCTCTTTACGagagcgtggaacaaagaaattGCAAGAATTGCAGTCGAGAGCAAGGTCCGCAAGCGACGAAAATCTCAAGGAATTCGAGCGAAAAAAGAATCAAATTCTTGGCTTGGAAAAACGAGAGACGAGCGATTTGCAAGACGCAAAGAACACTGTTGAAGACCTCCTACCGAGCGACTTACATGGGGTACTTGAAAGCGGATTTGTCAAACGATATTGGAGAAAGTTTGAAGGTGTCGATGATTTTTCAGAGCTTGAGGGTAATGCCGCTGTGACATCGAAGGAAGAAGTAGATGTTGAGTGTGCGCTTGCAGAAGGCGAGAAGATCACAGAAGAGGAACAAGACGAGAGTATGCCAAACGAAGAACCCGAACCAGGCGTTGTAAAGAAGCACAAAGAAGGTTACGAACTGAAGCATCGGGAGAGTTCGAAGAGGCGGGCGTTGCTTCAGCGAGGCGGTAGTGATGAAAGGAAAAGCGCGAAACAAGAAGGAGCCGAAGTCGAAGGTTCTGTTACTGTTGATGGTGAGTCAGAGTCAGTGCAAACCTCAGGAGAATTGGAAGACGAGCTAAGAGGTGTTGACGTCGAAGCGCTTGTTAAAAAGGTTAACGAGGATATGAAGAAGGAGGTGACTGTTAGGAGATTATCTGCTTCAAAGAAAGAACAAGAGCTACGAGAATATGTTGAAAAAGCAGGGGAACGAATGAAGAACTCTCCGGTTGATGCCGAAGACGGAACCGTACCGAAAAACAAGGGCACTGAGGCTAATGAGGTAGATTCTGAACAACTACGTGAAGAGTCCTTTACTTGGAAAACTAAACGAAACACTCTTGTCTTTGTACTTGAGGAAAATGACCATGATTTGCCGTCAAACGATTCGCTGTTAACAGGAACATCCGAAAGCAGGCAACCAGTTGTCTCGAAGCCCTCTGTTGCGCAAAATATGAGTGCTATTGTAGATTCCGTTATTGAAGGGAAATTACAACCTTTGGACCAAGGGGAGGCAGAGAAAGGAACTGGTGACCAACGGACCAAAGAAGTCAATCAAGAAATAGGTTTGTCTTTATCAAAGGAGAAAACAAAAAGCGCAGACGCATATACGGTGCAGGAAAACAGTACTATTTCACAAGACGCCGCGGAGCCTTCAGAGATCTCTACAGAAAAAGCAGGATTTTCTGAATTGCTACAGGACACAAAAGACGAACAGAGAGAGCAAACTCCAGAAAACAGCCCTCAGAAAGGTCTAGTAAAACGACACACGCTGTTAATTGAAGGAAAGCTGCAGCCATTGGATCAAGAGATTGAAAAAGATGTCGAGAGACCAGATGGACAAGAAGGCCATTTTTCAGTCGGTCAAAAAGCGTCTTGGTGTCTTTCAGAAGATGAAACGAACAGTGCGGCTCTCCATACAGAACGAACAGAGGTGAATGTCGTACAAAATTTTAATTCTGATATGGAGGCCAAAGAGAAGAGTAATTCAGAAACAGCAAAGACCTGTGAGCTGTCAGAGGACGGAGAAAGCACAGAGAGCGGACCCGACACAGACAACATCCCTCCGAAAGGTCTTGTGAAGCGTCACACGTTGTTGATCGAGGGGAAAATACAGCCTTTTGATCAAGAGTTCGAGAAGAAAGTGCAGAAAGAGACTGGGAACGAAACTGAACGTGCAGATGACCAGGACGCATGTGCATCTCCTTTGAAAGGGGATAAACGTGTGGTTATCGATGGGCTGAGCGACACGAAAGACTTGGAAATCGACGTGGAAACTGGCGCCTCGAGGGTAAAAGACCCCTCTGTATTGCTGGAGGACATAGAAGACAAGTTGAGTGAACAGGATACGGAGAACAAGCTTCAGAAAGGTCACGTGAAGCGTCACACGCTGTTGATCGAGGGAAGACTACTGCCACTAGATCAAGAGTCAGACAAAGATGTTGAAAAAGACGACGGTAAAGAAAGCGAGTTCGTTCTTGACAAGGAGGCCGTTTTGCCAGTTGAAGATCAAGGACAATTGCGATATCAAATTGAGCGAACAAGTGATTCGGAAGTTGAGCAATGTGTTGAAGAAAATCAAGACAACGAGAGTGTTTCTGGtttggtcaaacgagaaaaactacgTATTGAGGAGCGGCTTCAAACTACATCGACGGAGTCCAAACAAGATTCAGAACAGGCGATGACGGGCAGTGACAATACAGTGCTCGAAACTGTTGATGGAGAAGAAAATTGTCAGGAAGTCGACACAACGGAAAAGTCAAGCGAGGAGATCGAAGAGATAAATGGAGAAGAAGAGCAGAGTGAGATAGCTGTGGACACGTCAAGCGTGGTTAGAGTAAGGGAACAGGCTCAGCATTTGGAAGGCATTATTCGTGTAACACAAGATGGGGAAAAGGTTAAAAGCCCATCATCAAAAGATGGCGATCTTAAAACAAGCGATGAATCTCCGAAATTTTTCATAGTTCCACGTGCGGGTTCCGAGGAGAATATAGATGAGGGAAACGAGGTGAACACTGTGGAGAAAATCAGCGAAGAAAAAATGGATTGCTTGAGCGGCAGTGCGGTCAACTTTGCTCTTTTAAAGCCTCAAGAAAAATCAGATTCGGAAAAGGAGAACCTTGAGTTGGACAATAAAAACTTTGTAGATTGGAACGTTGCGAATGTAAAACAAAGAAGGCAAATCTTTGAAAATATTGTACGGAATTACGACATGGACAGATTGAAAGGTGACGAAGAAAGCGAAAACAAAAGCAACTCGCTTCGTCGCCACGAATCAATGCCGAAGATGACTCGTGCAACCGAAAAGCCTGCTTTTCGTCGTCGGTCGGTTTCGGATGTAACTGCAACGGTATCGTCGGGTTCCGATCGGAAAGTTGGCTACACCATTGAATTCAGGAAAAGAATTGATGGTTCGTCGAGTTCGTCATCATTGCCTCGTGATTGGAGCCCTCTTGAACACAGACAACGACAGGAAGACAAGGACGTATTTTCCCCTGAAATTTCGCGAAAAGACAAACTCAAGAAAAATGCCAGTGTAGAATTTAACGATCGCCGGGCCACTAGTCAAACCGTTAAGGAGACTTTTCAAGTTTTAGATTCTAAGAATCAAAGAAACATTAGTAACATTAGTTAG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003472 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR043587 all species →	Family	Protein phosphatase Slingshot-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45864 all species →	SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030837 all species →	Biological Process	negative regulation of actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_57412.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.