Gene detail

Detailed information of evm.model.contig_57795.3 in Platygyra sinensis

Genomic Location: contig_57795:1881...20072
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_57795.3

TTTATATCCCTACATATAACTGCTGGACAGGTCCAAACTGAAGTACCTGGCTCTCCTGTATTTGTAATGAAACTTGCAAAAAATGCAAGACATTTAGAAGTGCAGCTCTTGGCTGATGAGCATGGCAATGCAATGTCCATATTTGGAAGAGATTGCTCAGTGCAGCGTAGACATCAGAAAATCATAGAGGAAGCACCAGCTGCTATTGCTCGGCCTGATGTCTTCAGAAAAATGGAAGAGGACGCAGTGAAGTTGGGTCGTCTTGTAGGATACGTCAGTGCAGGAACTGTAGAATATTTGTACCATGCTGAGGATCACACTTTCCACTTTCTTGAACTCAACCCAAGGCTACAGGTTGAACATCCTTGCACTGAAATGGTGTCCGACATAAACCTTCCTGCAGCTCAAATTCAGATTGCTATGGGTATTCCTCTGTACAACATCAAGGATATCAGAACAATGTATGGTCATGAACCATTTGGAAAAGATCCAATAGATCTCGACAATCCTAAGAACCTTCCCAAGCCAAAGGGACATGTCATTGCAACTCGTATTACTTCAGAGAATCCAGATGAGTCTGGTAACTGTGAAGGTGAGAGCTCTGGGAAAGCTGAAGGGAAAATTTGTCAATGGGTTTATGTAGGTGTAAGGCTGCTGGCTAGTGCCACCAGCGAGGCATCATCACTCGAAAACAAAGAGTTGGTGAACCATTTAAGAAGTGGACCTTCAAAGAATTGTCCTGTTCTTTTTCAGGGCTTTAAACCCAGTAGCGGTACAGTAAAAGAGTTAAATTTTCGCAGCATGAAAAATGTCTGGGGCTACTTCAGTGTAGGAGCTGAAGGTGGCCTTCATGAATTTGCTGACTCTCAGTTTGGTCACTGCTTTGCCTGGGGAGAGGACAGAGAGGCAGCCAGGAGGAACATGGTTTTGGCTTTAAAAGAAATTTCTATACGTGGTGATTTCCGTACCACAGTGGAGTACCTAGTCCAGCTGTTGGAACATGAATACTTCTCAAAAAACATAATTGACACTGGCTGGTTAGATTATTTAATTTCCAAGCAAGTTCAGACGGAGCGGCCTGATGCAATCCTTAGTGTTATATGTGGAGCTGTTCATGTGGCAGATGCTGGCATCAGCAAAAGATATGTCAACTTCAAGTCTGCACTGGAGAGGGGCCAAATCCTTTCGACAGAGTGTTTAGCCAACATTGAAGATGTTGAACTGATCAATGAAGGATTCAAGTATTGCTTAAAAATTTGGAAGTCAGGACCAAACACATTTTTCCTTGATATGAATAATTCTTGCACAGAAGTAGAAGCCCACAGAATGAGTGATGGTGGATTACTTTTGTCATGGAATGACAGCAGTCACACCACGTACATGAAGGAAGAAGTAGACAGCTATAGATTGACTATTAGTGGGAAGACTTGCATCTTTCAGAAAGAGAATGATCCTACAGTTTTAAGGTCACCCTCAGCTGGCAAACTAATACAATTTACTGTCGATGATGGAGGACATGTCTTTCAGGGAGAGTCTTTTGCTGAGATTGAAGTCATGAAGATGGTTATGCCTTTGACAGTTAGTGAAAGTGGCTGTGTACACTATGTGAAGAACCCTGGTGCAGTGTTAGAGCCTGGCTCAATTGTGGCCAAGTTGGAGCTTGATGATCCTAGTAAAGTTACACAGGCACAGCTCTATACTGGCCAGTTCCCTCAAACTTGTAGACAAAAAGTGAAAGGAAGCAAATTGCATCAGAGACTGGAAGAAAATGTCAACACACTTATGAAGGCCTTGAAAGATCCTGCACTGCCTTTGCTGGAGTTACAAGAAATGATCTCATCCATTGCAGGGCGTATTCCTGCAACAGTTGAAGAAACTATAAAGCGACATCTTTCAAGCTATGCCAGTAATATTACATCAGTACTGAGCCAGTTTCCTAGTCAGCAGATTGCAAATGTTGTTGATGCACATGCAGCAACTCTGACTAAGAGAACTGAAAGAGATGCCTTCTTTTTGAACACACAAAGTATTGTGCAACTTGTACAGAGTCGCGAGAAAACTCTGCCAAAATGTATTGACTTTAACATCGAACATCAAATTAGCTGGGAAAGTGTGGTAGAAGGGGAGATAGGAACGATGCATTTTGTCTTGATCCAGGGCATCATCAGGGAGATGATGATGATGATGATGATCGCGATGATGCCGTGGATCTGCAAAAGCTCGAAGTAG

Transcript

evm.model.contig_57795.3

GGTTTATATCCCTACATATAACTGCTGGACAGGTCCAAACTGAAGTACCTGGCTCTCCTGTATTTGTAATGAAACTTGCAAAAAATGCAAGACATTTAGAAGTGCAGCTCTTGGCTGATGAGCATGGCAATGCAATGTCCATATTTGGAAGAGATTGCTCAGTGCAGCGTAGACATCAGAAAATCATAGAGGAAGCACCAGCTGCTATTGCTCGGCCTGATGTCTTCAGAAAAATGGAAGAGGACGCAGTGAAGTTGGGTCGTCTTGTAGGATACGTCAGTGCAGGAACTGTAGAATATTTGTACCATGCTGAGGATCACACTTTCCACTTTCTTGAACTCAACCCAAGGCTACAGGTTGAACATCCTTGCACTGAAATGGTGTCCGACATAAACCTTCCTGCAGCTCAAATTCAGATTGCTATGGGTATTCCTCTGTACAACATCAAGGATATCAGAACAATGTATGGTCATGAACCATTTGGAAAAGATCCAATAGATCTCGACAATCCTAAGAACCTTCCCAAGCCAAAGGGACATGTCATTGCAACTCGTATTACTTCAGAGAATCCAGATGAGTCTGGTAACTGTGAAGGTGAGAGCTCTGGGAAAGCTGAAGGGAAAATTTGTCAATGGGTTTATGTAGGTGTAAGGCTGCTGGCTAGTGCCACCAGCGAGGCATCATCACTCGAAAACAAAGAGTTGGTGAACCATTTAAGAAGTGGACCTTCAAAGAATTGTCCTGTTCTTTTTCAGGGCTTTAAACCCAGTAGCGGTACAGTAAAAGAGTTAAATTTTCGCAGCATGAAAAATGTCTGGGGCTACTTCAGTGTAGGAGCTGAAGGTGGCCTTCATGAATTTGCTGACTCTCAGTTTGGTCACTGCTTTGCCTGGGGAGAGGACAGAGAGGCAGCCAGGAGGAACATGGTTTTGGCTTTAAAAGAAATTTCTATACGTGGTGATTTCCGTACCACAGTGGAGTACCTAGTCCAGCTGTTGGAACATGAATACTTCTCAAAAAACATAATTGACACTGGCTGGTTAGATTATTTAATTTCCAAGCAAGTTCAGACGGAGCGGCCTGATGCAATCCTTAGTGTTATATGTGGAGCTGTTCATGTGGCAGATGCTGGCATCAGCAAAAGATATGTCAACTTCAAGTCTGCACTGGAGAGggGCCAAATCCTTTCGACAGAGTGTTTAGCCAACATTGAAGATGTTGAACTGATCAATGAAGGATTCAAGTATTGCTTAAAAatttggaAGTCAGGACCAAACACATTTTTCCTTGATATGAATAATTCTTGCACAGAAGTAGAAGCCCacagAATGAGTGATGGTGGATTACTTTTGTCATGGAATGACAGCAGTCACACCACGTACATGAAGGAAGAAGTAGACAGCTATAGATTGACTATTAGTGGGAAGACTTGCATCTTTCAGAAAGAGAATGATCCTACAGTTTTAAGGTCACCCTCAGCTGGCAAACTAATACAATTTACTGTCGATGATGGAGGACATGTCTTTCAGGGAGAGTCTTTTGCTGAGATTGAAGTCATGAAGATGGTTATGCCTTTGACAGTTAGTGAAAGTGGCTGTGTACACTATGTGAAGAACCCTGGTGCAGTGTTAGAGCCTGGCTCAATTGTGGCCAAGTTGGAGCTTGATGATCCTAGTAAAGTTACACAGGCACAGCTCTATACTGGCCAGTTCCCTCAAACTTGTAgacaaaaagtgaaaggaagcaAATTGCATCAGAGACTGGAAGAAAATGTCAACACACTTATGAAGGCCTTGAAAGATCCTGCACTGCCTTTGCTGGAGTTACAAGAAATGATCTCATCCATTGCAGGGCGTATTCCTGCAACAGTTGAAGAAACTATAAAGCGACATCTTTCAAGCTATGCCAGTAATATTACATCAGTACTGAGCCAGTTTCCTAGTCAGCAGATTGCAAATGTTGTTGATGCACATGCAGCAACTCTGACTAAGAGAACTGAAAGAGATGCCTTCTTTTTGAACACACAAAGTATTGTGCAACTTGTACAGAGTCGCGAGAAAACTCTGCCAAAATGTATTGACTTTAACATCGAACATCAAATTAGCTGGGAAAGTGTGGTAGAAGGGGAGATAGGAACGATGCATTTTGTCTTGATCCAGGGCATCATCAgggagatgatgatgatgatgatgatcgcGATGATGCCGTGGATCTGCAAAAGCTCGAAGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21385 all species →	ACCA_BT	Acetyl-CoA carboxylase, BT domain	Domain	Interproscan
PF00364 all species →	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF08326 all species →	ACC_central	Acetyl-CoA carboxylase, central region	Family	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR049074 all species →	Domain	Acetyl-CoA carboxylase, BT domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR001882 all species →	Binding_site	Biotin-binding site	Interproscan
IPR049076 all species →	Family	Acetyl-CoA carboxylase	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR013537 all species →	Domain	Acetyl-CoA carboxylase, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45728 all species →	ACETYL-COA CARBOXYLASE, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003989 all species →	Molecular Function	acetyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_57795.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.