Gene detail

Detailed information of evm.model.contig_58343.10 in Platygyra sinensis

Genomic Location: contig_58343:63965...90992
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_58343.10

AACTCTCGCAGTTCTACGGGTCTTTTTGAGTTTGTTCATCAGATGAATGTTGGTGCTAGACAGAGAGGTGATTCCAGTCCCACAGACAGTGGTGTAGACACTAGTGAGTGGGAAGAAAATCGTAGAGAACCAAGAATGTCCCTAGAGCCTTACAACTATGGAACTGACAGTGCCTGGGCTAGTCGAAATGGATCAGAGTCTAAGAAGAATGGTCCTGATAATGGAAGACCAACAATTATGACCAATGGGGCCAGTCCTGGAAGATCACCCAAGAACTCACCACCTTTGGGTCAAGGGAAAAACCAGAGGAAAATGCCTGTCCAAGCTGCCAGTCAGTTTTCCGGCAAGAACAAACTTTCTTCTGGAGCATCTTTCATCTTCACTCTGAGAACACCTCAAGAGACTCAAGTCCCCCCTCAGGAAAGACTAAAGCAAAACCAAGTGGTTATAGGACAAAAAACAGAAAACAAACAGCTTAGTTTGAATTCTACTTGCCTAATTTTAGCTGATAAGGAATTGTTAGCTAAGGGTAATCAATGGACGAAAGAAATGGAGATGAGATTGACAGATACTGATGTGGTGCTTTTAGATGGGGAGACACAGGACGTTGTTGAAGTGTTTTCATTAAACACAATTGGTCATGTGCACCACTACAGTGACGATCCTGACTTGAACAGTGTGTTGGTATTCAACACAATACAGACAGAAGAAAAATTTGCCGCCATGCATCTGTTCCAGTCAGACAGGGTCCCGGCAGCAGTTGTGGCCACTGAAATTATGAAGGCTTCCAGCAGCAAATCAGCAATGCCCAACAGATTTGCATCAAGAGGTGGCGCTATACTGCCCCCACCCCCCACACATCCAGCACCCCCTCCTCCCACGGGAGTTGATCAAGAAAGGTTAGATCTCTATGAGAAATCTTTGGTGGCTCAGACCATTGCAGCATTTTCTGCAGTGTCTGATGACACAAAGAAAACAGCAAAGCCACAAGTCTTGTCTAAATATCAGGCATCAGAATCATCCTCGGATATCCCTGATGAATCACTGTCCGCAGAACTGTTGGAGGCACGCACAAACAGAGATGTGCAAATCTTGAACCACTGTATTGATGATATTGAGAGCTTAGTGCTGAGAACAAAAAGGTCGGCTGAGGCATGGAAGAAATTGCAGAAAAAGAAAGGAAAATCAAAAGACAGTGCTTTGGTTCAGGAAGCTAAACCTCCTCCAGAGGAAGATTTTTATGATGCATTTCAAAAGTTGAAGCATGCCTTAAACTTGCTGGGAAAGTTGAGGCACCACATTCACAACCCTAACGCTGCAGAATTGGTTCATTATTTATTTATTCCTCTCTCTTTGTTGGTTCGTTGTACTGGAGGTCCCGAGAAGGCCAGAGCTGTTGTTGCCCCGTTGCTTACTACACATGCCATAGACCTACTGCAGAACTGCCTCTCATCCAAGGAAACAGACTTTTGGATGGCTCTGGGACCCAACTGGACGTTAGCAAAATCAAGCAAACATTTTAAGGAACAGGTTATTCCTCATTACACGCCTGTGTTTAAGGATGGCTGGGTGCCACCAGAGGTGATCGCTGGTAAAGATGTGTCCAATCTAAGTGCAGCCATTGCTGTGAATGCCGCTAATGCTGCAGCTGTGGCCCAATTAACTGATGGACAAAGAAAGGGTGAAGATTCTCCTGCAAACCTAGCAAATCCTGCGGTGCTTTCTGCGGCGGCCAAGTTCAGACGACTGGCAAGCGTAAAGAAACCTGATGAAACTCCACCATCAAGCCCAACGAAGAAGGGTTTGAGAAGAGTTCGTGTTCTGTTTGACTTTCAAGCAAGGAACAGCAAAGAACTGACAGTTCAGAAAGGAGAAGAAGTTGCAGTTCTTCTTGACAATCGCCAGTGGTGGTGTGTCAGAAACTCTGAAGGGTCCATAGGTTTTGTGCCAAATACAATCGTGGAAGAAACAGTGGTTCTTCCCAACCCCCCTACGATAGCTCCTCCGCCTGTTCCAACAACTCAAGTGACGTCATCTCAGACAGTGGTAGGTTGTGTTGAGACAACTCAATTGTCACGCTGA

Transcript

evm.model.contig_58343.10

ataACTCTCGCAGTTCTACGGGTCTTTTTGAGTTTGTTCATCAGATGAATGTTGGTGCTAGACAGAGAGGTGATTCCAGTCCCACAGACAGTGGTGTAGACACTAGTGAGTGGGAAGAAAATCGTAGAGAACCAAGAATGTCCCTAGAGCCTTACAACTATGGAACTGACAGTGCCTGGGCTAGTCGAAATGGATCAGAGTCTAAGAAGAATGGTCCTGATAATGGAAGACCAACAATTATGACCAATGGGGCCAGTCCTGGAAGATCACCCAAGAACTCACCACCTTTGGGTCAAGGGAAAAACCAGAGGAAAATGCCTGTCCAAGCTGCCAGTCAGTTTTCCGGCAAGAACAAACTTTCTTCTGGAGCATCTTTCATCTTCACTCTGAGAACACCTCAAGAGACTCAAGTCCCCCCTCAGGAAAGACTAAAGCAAAACCAAGTGGTTATAGgacaaaaaacagaaaacaaacagcttAGTTTGAATTCTACTTGCCTAATTTTAGCTGATAAGGAATTGTTAGCTAAGGGTAATCAATGGACGAAAGAAATGGAGATGAGATTGACAGATACTGATGTGGTGCTTTTAGATGGGGAGACACAGGACGTTGTTGAAGTGTTTTCATTAAACACAATTGGTCATGTGCACCACTACAGTGACGATCCTGACTTGAACAGTGTGTTGGTATTCAACACAATACAGACAGAAGAAAAATTTGCCGCCATGCATCTGTTCCAGTCAGACAGGGTCCCGGCAGCAGTTGTGGCCACTGAAATTATGAAGGCTTCCAGCAGCAAATCAGCAATGCCCAACAGATTTGCATCAAGAGGTGGCGCTATACTGCCCCCACCCCCCACACATCCAGCACCCCCTCCTCCCACGGGAGTTGATCAAGAAAGGTTAGATCTCTATGAGAAATCTTTGGTGGCTCAGACCATTGCAGCATTTTCTGCAGTGTCTGATGACACAAAGAAAACAGCAAAGCCACAAGTCTTGTCTAAATATCAGGCATCAGAATCATCCTCGGATATCCCTGATGAATCACTGTCCGCAGAACTGTTGGAGGCACGCACAAACAGAGATGTGCAAATCTTGAACCACTGTATTGATGATATTGAGAGCTTAGTGCTGAGAACAAAAAGGTCGGCTGAGGCATGGAAGAAATTgcagaaaaagaaaggaaaatcaaAAGACAGTGCTTTGGTTCAGGAAGCTAAACCTCCTCCAGAGGAAGATTTTTATGATGCATTTCAAAAGTTGAAGCATGCCTTAAACTTGCTGGGAAAGTTGAGGCACCACATTCACAACCCTAACGCTGCAGAATTggttcattatttatttattcctcTCTCTTTGTTGGTTCGTTGTACTGGAGGTCCCGAGAAGGCCAGAGCTGTTGTTGCCCCGTTGCTTACTACACATGCCATAGACCTACTGCAGAACTGCCTCTCATCCAAGGAAACAGACTTTTGGATGGCTCTGGGACCCAACTGGACGTTAGCAAAatcaagcaaacattttaaGGAACAGGTTATTCCTCATTACACGCCTGTGTTTAAGGATGGCTGGGTGCCACCAGAGGTGATCGCTGGTAAAGATGTGTCCAATCTAAGTGCAGCCATTGCTGTGAATGCCGCTAATGCTGCAGCTGTGGCCCAATTAACTGATGGACAAAGAAAGGGTGAAGATTCTCCTGCAAACCTAGCAAATCCTGCGGTGCTTTCTGCGGCGGCCAAGTTCAGACGACTGGCAAGCGTAAAGAAACCTGATGAAACTCCACCATCAAGCCCAACGAAGAAGGGTTTGAGAAGAGTTCGTGTTCTGTTTGACTTTCAAGCAAGGAACAGCAAAGAACTGACAGTTCAGAAAGGAGAAGAAGTTGCAGTTCTTCTTGACAATCGCCAGTGGTGGTGTGTCAGAAACTCTGAAGGGTCCATAGGTTTTGTGCCAAATACAATCGTGGAAGAAACAGTGGTTCTTCCCAACCCCCCTACGATAGCTCCTCCGCCTGTTCCAACAACTCAAGTGACGTCATCTCAGACAGTGGTAGGTTGTGTTGAGACAACTCAATTGTCACGCTGA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF08416 all species →	PTB	Phosphotyrosine-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR013625 all species →	Domain	Tensin/EPS8 phosphotyrosine-binding domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035462 all species →	Domain	Eps8, SH3 domain	Interproscan
IPR039801 all species →	Family	Epidermal growth factor receptor kinase substrate 8-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12287 all species →	EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0035023 all species →	Biological Process	regulation of Rho protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17277	EPS8; epidermal growth factor receptor kinase substrate 8	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.