Gene detail

Detailed information of evm.model.contig_58414.1 in Platygyra sinensis

Genomic Location: contig_58414:4125...20879
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_58414.1

ATGCTACACTATCTGTCTGATCCAAGGCAAAACCTCACAATGTTTGCACCATCAATCTTAGCACTACAACAGTTGCCTGATGTTGAAAGAAAATATTGGACTAACAGTACGGAGAGACTACAATATCTTATAAGGTATCACCTTATGGGTCAGGTGTACTCTTTGGAGGAGCTAAAGAACTTGACATCATTTAACGCTGTTAATGGCTTGAAGTTGAATGTAACTGTGCAGGGAACAAAGGTGTTTATTGATGGAACTGCTCAAATTATCCAACCAAATGTATCTGCTGAAAATGGATTTGTACATGTCATTGACAAAGTTCTTTTACCACCTCATATGGCATTTGAAAGTAGACTTCCTTCAACATCAGAGCTTCTTAGAAACATTTCTGAGTTTTCAGATTTCACCGGCATCTTACAGAACTTAAACCTGTTGTCGTCACTAGATGCATGTCAAGCTTGTACAGTGTTTGCTCCCACAAACAGTGCTCTGAAGAGCAGAAACCTGACTTCACGTACCTTAAAATACCATGTTGTGGAACATTATCTCATAGAGGAATCTATCCGAAATGGAGAAGAATTCTCATCTTGGCTGGGAATGGATTTTCTTGTCAAAATTACCAAGCCTGGGGCAGGAATGCTTCAAGTCAATAGGATTGATGTGGTCATCAAGGGTCATAAAGCTAGAAGAGCAATGGTGTATGGCATAGATGGTGTGCTTGAACCAGTGCAAAGAAATTGTGATGAAGAAAAAACAGTGTTTGGTCGTGGTAGCTGTACTTTGTGTGCTCTATGGACCCCAAGATGTCCGGCTGGTTGGACCAAAATTCGTGTTTTACAGGGTTCATGCCGAATTACAATAGCTATTTTTACCGTCAGTGGCTGTCAGGCTCTTTGCCAACAAACCAATATTGTTAAGAAATGCTGTCCTGGATTCTGGGGCCAGGACTGTCAATCTTGTCCTGGAAGTCTGACCAAACCCTGTTCCAGTCATGGCAGTTGTGATGATGGCAAGACTGGAACTGGTCACTGTCAGTGTGAAGCTAATTTCACTGGGACATCATGCGAGAAGTGCATTCCAAAAAAATATGGCAGGAACTGCACAAATGACTGTAAATGTGTCAGTGGCTTGTGCAATGAAGGTGTTGATGGAGATGGAAGATGTTATTGCCAGCATGGTTGGAAAGGACAGATTTGCAATACCTCTGCAAATTTTGCCAACTGTCTTCCAATTAACTGCAGTCGACATGCCACATGTCGTGGTCCAAGTGGTAGTGGGAGGTGTGAATGTGATGCTGGTTACACAGGAAATGGAACTCACTGCACAGAAATCAACAGATGTGTTGTGAATAATGGCGGCTGTCATCAAAATGCCACTTGCACTGTTGATATTACTATGCCAGGCTTCAGGTCCTGTTTGTGCAATCGTGACTTTACAGGAGATGGGTTGTTTTGCGCTGAAATAGATCCTTGTCAAGGGAATAATGGTAGCTGCCATAAGAATGCAACGTGTACTACCATAGCACCTGGAAAGAGGAATTGTTTTTGCAACAAAGATTTTTCAGGAGATGGAGTGAAGTCTTGTGTTGGTATAAATCCATGTGACTTGGATAATGGAGGATGTAGTGACAGAGCAGTTTGTAACAATGTAGGACCACACCAGAGGACGTGCACCTGTAGAAGATTCTATGTTGGAGATGGATTCACATGTATTGGTGATATAATGGAGGCTTTAAAGCTTGACCCACAATTGTCAGCGATAGAGAGTCTTATTAAGAAATATGGTCTTGATAAGCTCTTGGCGTCTCACGGCCTCTTTAACCTTTTGGCTCCAGTTAATGCTGCTCTTAACCAGTTACAATTAGGAAGTCGCAAGCGTCGTAGTGTGCAGGTACCAATAAACCAGGAGGAAATGCTGTTGAAATACCACATCATTGGCTGTGCAAGAATCCCTAACACCTTAAATGGTCATTCTGCAAACTTTACAACACTGCTCGGACCGTCTGTATCAGTGAAAACAGAGGTGACTTTTTATCGATGA

Transcript

evm.model.contig_58414.1

ATGCTACACTATCTGTCTGATCCAAGGCAAAACCTCACAATGTTTGCACCATCAATCTTAGCACTACAACAGTTGCCTGATGTTGAAAGAAAATATTGGACTAACAGTACGGAGAGACTACAATATCTTATAAGGTATCACCTTATGGGTCAGGTGTACTCTTTGGAGGAGCTAAAGAACTTGACATCATTTAACGCTGTTAATGGCTTGAAGTTGAATGTAACTGTGCAGGGAACAAAGGTGTTTATTGATGGAACTGCTCAAATTATCCAACCAAATGTATCTGCTGAAAATGGATTTGTACATGTCATTGACAAAGTTCTTTTACCACCTCATATGGCATTTGAAAGTAGACTTCCTTCAACATCAGAGCTTCTTAGAAACATTTCTGAGTTTTCAGATTTCACCGGCATCTTACAGaACTTAAACCTGTTGTCGTCACTAGATGCATGTCAAGCTTGTACAGTGTTTGCTCCCACAAACAGTGCTCTGAAGAGCAGAAACCTGACTTCACGTACCTTAAAATACCATGTTGTGGAACATTATCTCATAGAGGAATCTATCCGAAATGGAGAAGAATTCTCATCTTGGCTGGGAATGGATTTTCTTGTCAAAATTACCAAGCCTGGGGCAGGAATGCTTCAAGTCAATAGGATTGATGTGGTCATCAAGGGTCATAAAGCTAGAAGAGCAATGGTGTATGGCATAGATGGTGTGCTTGAACCAGTGCAAAGAAATTGTGATGAAGAAAAAACAGTGTTTGGTCGTGGTAGCTGTACTTTGTGTGCTCTATGGACCCCAAGATGTCCGGCTGGTTGGACCAAAATTCGTGTTTTACAGGGTTCATGCCGAATTACAATAGCTATTTTTACCGTCAGTGGCTGTCAGGCTCTTTGCCAACAAACCAATATTGTTAAGAAATGCTGTCCTGGATTCTGGGGCCAGGACTGTCAATCTTGTCCTGGAAGTCTGACCAAACCCTGTTCCAGTCATGGCAGTTGTGATGATGGCAAGACTGGAACTGGTCACTGTCAGTGTGAAGCTAATTTCACTGGGACATCATGCGAGAAGTGCATTCCAAAAAAATATGGCAGGAACTGCACAAATGactGTAAATGTGTCAGTGGCTTGTGCAATGAAGGTGTTGATGGAGATGGAAGATGTTATTGCCAGCATGGTTGGAAAGGACAGATTTGCAATACCTctgCAAATTTTGCCAACTGTCTTCCAATTAACTGCAGTCGACATGCCACatgtCGTGGTCCAAGTGGTAGTGGGAGGTGTGAATGTGATGCTGGTTACACAGGAAATGGAACTCACTGCACAGAAATCAACAGATGTGTTGTGAATAATGGCGGCTGTCATCAAAATGCCACTTGCACTGTTGATATTACTATGCCAGGCTTCAGGTCCTGTTTGTGCAATCGTGACTTTACAGGAGATGGGTTGTTTTGCGCTGAAATAGATCCTTGTCAAGGGAATAATGGTAGCTGCCATAAGAATGCAACGTGTACTACCATAGCACCTGGAAAGAGGAATTGTTTTTGCAACAAAGATTTTTCAGGAGATGGAGTGAAGTCTTGTGTTGGTATAAATCCATGTGACTTGGATAATGGAGGATGTAGTGACAGAGCAGTTTGTAACAATGTAGGACCACACCAGAGGACGTGCACCTGTAGAAGATTCTATGTTGGAGATGGATTCACATGTATTGGTGATATAATGGAGGCTTTAAAGCTTGACCCACAATTGTCAGCGATAGAGAGTCTTATTAAGAAATATGGTCTTGATAAGCTCTTGGCGTCTCACGGCCTCTTTAACCTTTTGGCTCCAGTTAATGCTGCTCTTAACCAGTTACAATTAGGAAGTCGCAAGCGTCGTAGTGTGCAGGTACCAATAAACCAGGAGGAAATGCTGTTGAAATACCACATCATTGGCTGTGCAAGAATCCCTAACACCTTAAATGGTCATTCTGCAAACTTTACAACACTGCTCGGACCGTCTGTATCAGTGAAAACAGAGgtgactttttatCGATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02469 all species →	Fasciclin	Fasciclin domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR036378 all species →	Homologous_superfamily	FAS1 domain superfamily	Interproscan
IPR000782 all species →	Domain	FAS1 domain	Interproscan
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR051146 all species →	Family	Phosphatidylserine Receptors and Protein Disulfide Isomerases	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24038 all species →	STABILIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.contig_58414.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_58414.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.