Gene detail

Detailed information of evm.model.contig_58483.1 in Platygyra sinensis

Genomic Location: contig_58483:3784...18756
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_58483.1

ATGGTAGAGTGCCTAACGAAATTGCCTTCTTACTTTTTGGTTACAGAAAATGTCAACTGCATTAAGTGTTATTCAAAGTATTCTCCATATTTCCGTGGTTACTTCATGGAAGCCAGAGATTGCCCAGGAGCCACCTTAAGAAATTCAACCATCAAAGACCCAAACATTGTTTGCTGTATTTTGGATAGTACCGTAATCCCTTCAATCCCACAGAATGTCAGTGTTTCTTTGGAATCTTTCATTGACATGGTTGGAGATACAACAAGGACAAGAGCATTGTATCCATTTTACTTGCAAGCATTAAGTGATGCTGGGATCACTGGTAGACGCCACATAGCGGCATTTACTGCTCAAATCTTATATCAGACATCAGGAATGAAATTTTTTGAGGAGAGCTCCAACGGTCAGGAATACGAAAGAAAGGAAAGCTTGGGGAATTCTAAAGAGGCCGACGGCCGCAAATACATCAGTCGAGGATTTCTGCCTCTAATTGGAAAGCACATGTACCAGCTTGCAACTTTATCTGTCAATAGCAACATCATCCGCCAACCGGAGATTGTGGCGTTGCCATCAATAGGATTTAAGGTTGCCGCATGGCTATGGACTACTGGATATAGTTCAGCTGACAACAGCAGCTTACCGACTGGGAACTTGGGAAAGTTCAGCAAAGGAACAGAATACAGCTTCTTGGAGTTATCTATTAATATTCAAAAAAGTACAGCTGGGATCGAAACACTGTTCCATTACTGGCGGCATACACAAAACGTAATTGGCCTCCAATGTCCGTCAGATGGGAATGGACCAAGGTGTTCAGTAGATGGAAGAAGTGGAAGGTGTAAATTGGTGACAGGCTGCGAGGGTGAATATTCTGCAACAGGATGTCCGCTTGCAACCTCGCTGGTCACGTGCTGTCTTGATTGTCAAAATCCGATCGATTTAGCCTTCGTATTGGATTCCTCTAGAAGCGTTAATCCATCCAACTTTAGACTTGGGCTTCAGTTCATCGCAAAGGTTTGCGAATATTTCAACATTGCATATCCTGATGGTACTCGAGTGGCTCTTATCAGATACAGCAACGTTCCAACGATAATGTTTCGTTTTAACACCTACGTCAACAAGCAAGACGTCATTCACGCAATTGGATCGGTACCTTACGAACCTGGTTTGACCCGCACCGACTTAGCTCTCTTAGAAGCCCACGCAAGCCTGTTTGGAAACCCAGACCATGGAGTCAGACCTAAAGAACTGGGTGTTCCGAGAGTGCTCGTTCTTCTTACTGACGGAAGAGCAAGCCAAGGAACGGCCTCGGTAGTGCAGCCATCCGAGTTGCTACATGAAAACGGGGTAAATGTCTTTGTTATTGGGATTGGTCAGGCACTAAACAAAAATGAGTTGAACATCATTGCCAGTGATCCTGATGATTATCACGTAGTTTCTTCCAAAACCTTTGCGGGCGTAAATTCCCTGGTAGGAAACATTCAAGAGGGCTCTTGTTATGAACCTGCTCTCCTCGAGGAGGAAGAAGAAGTGATGTCTAGTGTGGTACAAAATTCTGTCAAATATTATAAATACGACTTATTGAACAGAACGGGAATAAAGACCGTATTCTTGCAAACATCCCATGGAGGTGCTAGTATCTCCGTTTCTACAAGCAAAAGGAATCCTCGAAGTTATCACGTCAACCTTGGATCCTGTCAGATTCAAGGAGATATTAAGCTTGCTCAGGATAGCGATCCCCTTTGGCACCTGAATGACCTTGAAAACAGTACATTTTGTAATGCTACTTCTAAGGGAGGCTACACCGAACCTCTCTTTGTGTCTAATGATGAATTCCCTGAAGAAGGACTCATCATTTACGTGAAAGCGTGCTCTAGCAGATGGTTTTATGTCTCAGTCGAGGGTGTTAATGAGACAAATACGTTCAATTTAACACTGTTCAAAGACCTCATCAGAATAACGGCTAAGAAAAACACGGATGCAGTCTCAGAGAGTAATTACACCACCTTTCCGATTCCTAAGAAAGTGTTCGTCGGAGCAGCAGTAGCGACCGTCGGCGCCACAGCAGTCGTAGCAACTGTGGTTACGCTATCATGCGCAAAAGAATTTGAATTCAAAGGCTCCACGAAGATTAAGAAGAAAAAGGGGAAAGACGAGGAAAAGAACAATAACTCTGCGGTTAACGAGGCTTTTGAAGGAGACGATGATGAAAAGCATAGCAGTCAGAATCGCTCCAGTCTCACTCCCTTACTAGAGAGCGGTGATCTGAAGAAAAAAAACACGCGTTCAATTCATGTTAGCGAAAAGAAGACTGATGTTAGGACAGGAATTATAAAATTTCAGGAAGGAAATGATATAGAGAAAGGAGACGGCCGCGCGTCGCACGAGGAAGAATTATCACGAGGAAATTTCTCATGTTCCAGTGAAGGTCGACCAAGGAAACTATCGCGTCACGGTAGTCTGGTGACTTCGATGATTTATGATTTACAGAGAGAAGACACAATTATAGAAAAAACAATGGAAACGGAAACACCGGGTTTTGGGGGAACTGATTCTCTTATCGAGGGAACTCGCTTCAAACGTCAGCTTACGAGTACAAGTGTCTCAGTATCTGTTGTTACATCAAAAGGACTTCAAAACGAAAAGGTTCCAATTGACACAAATAGGGTCAGAAGGTTTGGCGGCGAGACAATGATACGAAACTGTGATATGCCGTTAACAGGACTAGGAGATACGGAAAACGTACTTAGAAAAACTAAACCAAAACGAAAGGATGCTGTAACACTTAACTCTTCCAAAGATCAAAATCCTTTTTCGAGTAATGATCTCAAAGCAGTCAGAGGTGAAAACGTAAAACAAAAAGACGGGAACACAACGAAAAATTCAAACAGGTCTTTTCCTGATCGGGAACCAGAAAAAATGACAATCTGTTGCTTTCCATGGCAGCCTTCTTTATCTAACAACAACGTTAAGAAGGCTTCAAAGGCTGAAGAAGAATCAGAAGGAACTGACACTGAAAAAACCGAAACTTGTGAAGTGAGTGATAACGCCGAGGAGACTGAAAAAGTTAGTTTTTTAGTCCGTATTAAAAGGAAAGTCACAAAGCGTAAGGTTATGGCAGCGATTTGTCCTTGTTTCACGTATTTTATTCTGGAAGGTGAACATGACAGAAATCCAGTCGACAAGGAAAAGGGGAAGAGCGATAAAAATCCGCAAGAAATAAGGAACAGCCGCTTTGAGCGAGATATGCAAATGAGTCAAGTGTTTTGCGTATTACTATCTCAGCTTTTATTCCTGGCCGGAGCTGACGCTAGAGATGACACAATTGCCTGTGCTGCCGTGGCCATTACCATGAACTATCTGTCTCTTGTAACTCTCTGTTGGCTCATAGTCCAGGCCCTGTACCTCTTCTCCTTCACCAGGAAACGTGAAAATGAGGAGAAGCAGAAAATGAAAACAAAACTTTATTACGCAGGCGCTTGGGGTTTACCACTTATTGTTGTATGTGTCCTTGCCTCTAAGTACGAGATGTACGATAATCATCCACACTGCTGGATCTCATTCGCTGACGCGTTGAGCTGGTCAGTGGCAACACCCATCATAACGTTAGGAATGGTACAGTTAATACTCATTGTTTTGTTGGCAAAAGCTTTGATTACTTACCGTAAGTCAGGCGACGTTGAGGAAAATGAAAACAAGAAAAGTGTCATCAAGTCCGGTTTACAAACAGTGGTTTGCATAACAATCACTGTCATTCTAACTTGGATTCTGGGATCACTCTCCTTGAACATCGATCGTGATATCTACCATACCTTTTTCAGCATATTTAACTCGTTGCAGGGTTTTGGATTCTTCCTATTTTATGTGGTCTTACACCCTGAAGTGCGTGAACTAATTCTCGCCGCTTGGGAGTGGAAAAGCACTCTGGTGACACCGTTTGACGAGCATGAGGCCATTGAAATTGAAGAAGAGGACAAGCACAAAAAGAAAGGAAAAGGCAAAACTAAGTCTACGAACGACAACAACCAAAGGAAGAACGAAAGTAAACAAGAGAACCAACAAGGTCAGGCCATCGCGAATACCGTACAGACAGCGGCCGATGTAAAAATGACAGCTGCCTCGATAGCGGCCAGTAACAAAATTAGAAACCCTGAGAACGTAAAGGCAATCAAACCTGAGATTAAGAAAGAAACTCGAAAGTCAAGTTTTCCTGGTATAAAAGCGAATTCCACGCCAAGAACTCTTCCTCCCGTCGAGAAACAAAAGAAGAATGTTCCGTCGTCCAAAGGGGCGTTCCCAAGAAGGAAGATAACCCCTCAAGGACCCCCACAGAAATTTATAGAAGATTTAGCGCTTAAACGAAATGCCGCTGATGCTTCATCTACACCTAAGAATAAAAGTCTGCGGTCACCAGCACCATATGCTCAGAAACCACGATCCCCATCCTGGAGTAGGGGAATTCAATTCGAATACAAAGACAATCTCCCTGTTGCAGCTTTCAGCTCTCCACCACCTAACGTCAGGCTCCCGCGTCAGACAGTAGCTCCCAACACCACTCGAAAGAACCAAAAACTAGTGGGCAAGAAGAAGACAACCATGGGGAAAAAAGTTTCCAAGCCATGA

Transcript

evm.model.contig_58483.1

ATGGTAGAGTGCCTAACGAAATTGCCTTCTTACTTTTTGGTTACAGAAAATGTCAACTGCATTAAGTGTTATTCAAAGTATTCTCCATATTTCCGTGGTTACTTCATGGAAGCCAGAGATTGCCcaggagccaccttaagaaatTCAACCATCAAAGACCCAAACATTGTTTGCTGTATTTTGGATAGTACCGTAATCCCTTCAATCCCACAGAATGTCAGTGTTTCTTTGGAATCTTTCATTGACATGGTTGGAGATACAACAAGGACAAGAGCATTGTATCCATTTTACTTGCAAGCATTAAGTGATGCTGGGATCACTGGTAGACGCCACATAGCGGCATTTACTGCTCAAATCTTATATCAGACATCAGGAATGAAATTTTTTGAGGAGAGCTCCAACGGTCAGGAATACGAAAGAAAGGAAAGCTTGGGGAATTCTAAAGAGGCCGACGGCCGCAAATACATCAGTCGAGGATTTCTGCCTCTAATTGGAAAGCACATGTACCAGCTTGCAACTTTATCTGTCAATAGCAACATCATCCGCCAACCGGAGATTGTGGCGTTGCCATCAATAGGATTTAAGGTTGCCGCATGGCTATGGACTACTGGATATAGTTCAGCTGACAACAGCAGCTTACCGACTGGGAACTTGGGAAAGTTCAGCAAAGGAACAGAATACAGCTTCTTGGAGTTATCTATTAATATTCAAAAAAGTACAGCTGGGATCGAAACACTGTTCCATTACTGGCGGCATACACAAAACGTAATTGGCCTCCAATGTCCGTCAGATGGGAATGGACCAAGGTGTTCAGTAGATGGAAGAAGTGGAAGGTGTAAATTGGTGACAGGCTGCGAGGGTGAATATTCTGCAACAGGATGTCCGCTTGCAACCTCGCTGGTCACGTGCTGTCTTGATTGTCAAAATCCGATCGATTTAGCCTTCGTATTGGATTCCTCTAGAAGCGTTAATCCATCCAACTTTAGACTTGGGCTTCAGTTCATCGCAAAGGTTTGCGAATATTTCAACATTGCATATCCTGATGGTACTCGAGTGGCTCTTATCAGATACAGCAACGTTCCAACGATAATGTTTCGTTTTAACACCTACGTCAACAAGCAAGACGTCATTCACGCAATTGGATCGGTACCTTACGAACCTGGTTTGACCCGCACCGACTTAGCTCTCTTAGAAGCCCACGCAAGCCTGTTTGGAAACCCAGACCATGGAGTCAGACCTAAAGAACTGGGTGTTCCGAGAGTGCTCGTTCTTCTTACTGACGGAAGAGCAAGCCAAGGAACGGCCTCGGTAGTGCAGCCATCCGAGTTGCTACATGAAAACGGGGTAAATGTCTTTGTTATTGGGATTGGTCAGGCACTAAACAAAAATGAGTTGAACATCATTGCCAGTGATCCTGATGATTATCACGTAGTTTCTTCCAAAACCTTTGCGGGCGTAAATTCCCTGGTAGGAAACATTCAAGAGGGCTCTTGTTATGAACCTGCTCTCCTCGAGGAGGAAGAAGAAGTGATGTCTAGTGTGGTacaaaattctgtcaaatattatAAATACGACTTATTGAACAGAACGGGAATAAAGACCGTATTCTTGCAAACATCCCATGGAGGTGCTAGTATCTCCGTTTCTACAAGCAAAAGGAATCCTCGAAGTTATCACGTCAACCTTGGATCCTGTCAGATTCAAGGAGATATTAAGCTTGCTCAGGATAGCGATCCCCTTTGGCACCTGAATGACCTTGAAAACAGTACATTTTGTAATGCTACTTCTAAGGGAGGCTACACCGAACCTCTCTTTGTGTCTAATGATGAATTCCCTGAAGAAGGACTCATCATTTACGTGAAAGCGTGCTCTAGCAGATGGTTTTATGTCTCAGTCGAGGGTGTTAATGAGACAAATACGTTCAATTTAACACTGTTCAAAGACCTCATCAGAATAACGGCTAAGAAAAACACGGATGCAGTCTCAGAGAGTAATTACACCACCTTTCCGATTCCTAAGAAAGTGTTCGTCGGAGCAGCAGTAGCGACCGTCGGCGCCACAGCAGTCGTAGCAACTGTGGTTACGCTATCATGCGCAAAAGAATTTGAATTCAAAGGCTCCACGAAGATTAAGAAGaaaaaggggaaagacgaggaAAAGAACAATAACTCTGCGGTTAACGAGGCTTTTGAAGGAGACGATGATGAAAAGCATAGCAGTCAGAATCGCTCCAGTCTCACTCCCTTACTAGAGAGCGGtgatctgaagaaaaaaaacacgcgTTCAATTCATGTTAGCGAAAAGAAGACTGATGTTAGGACAGGAATTATAAAATTTCAGGAAGGAAATGATATAGAGAAAGGAGACGGCCGCGCGTCGCACGAGGAAGAATTATCACGAGGAAATTTCTCATGTTCCAGTGAAGGTCGACCAAGGAAACTATCGCGTCACGGTAGTCTGGTGACTTCGATGATTTATGATTTACAGAGAGAAGACACAATTATAGAAAAAACAATGGAAACGGAAACACCGGGTTTTGGGGGAACTGATTCTCTTATCGAGGGAACTCGCTTCAAACGTCAGCTTACGAGTACAAGTGTCTCAGTATCTGTTGTTACATCAAAAGGACTTCAAAACGAAAAGGTTCCAATTGACACAAATAGGGTCAGAAGGTTTGGCGGCGAGACAATGATACGAAACTGTGATATGCCGTTAACAGGACTAGGAGATACGGAAAACGTACTTAGAAAAACTAAACCAAAACGAAAGGATGCTGTAACACTTAACTCTTCCAAAGATCAAAATCCTTTTTCGAGTAATGATCTCAAAGCAGTCAGAGGTGAAAACGTAAAACAAAAAGACGGGAACACAACGAAAAATTCAAACAGGTCTTTTCCTGATCGGGAACCAGAAAAAATGACAATCTGTTGCTTTCCATGGCAGCCTTCTTTATCTAACAACAACGTTAAGAAGGCTTCAAAGGCTGAAGAAGAATCAGAAGGAACTGACACTGAAAAAACCGAAACTTGTGAAGTGAGTGATAACGCCGAGGAGACTGAAAAAGTTAGTTTTTTAGTCCgtattaaaaggaaagtcacaAAGCGTAAGGTTATGGCAGCGATTTGTCCTTGTTTCACGTATTTTATTCTGGAAGGTGAACATGACAGAAATCCAGTCGACAAGGAAAAGGGGAAGAGCGATAAAAATCCGCAAGAAATAAGGAACAGCCGCTTTGAGCGAGATATGCAAATGAGTCAAGTGTTTTGCGTATTACTATCTCAGCTTTTATTCCTGGCCGGAGCTGACGCTAGAGATGACACAATTGCCTGTGCTGCCGTGGCCATTACCATGAACTATCTGTCTCTTGTAACTCTCTGTTGGCTCATAGTCCAGGCCCTGTACCTCTTCTCCTTCACCAGGAAACGTGAAAATGAGGAGAagcagaaaatgaaaacaaaactttattaCGCAGGCGCTTGGGGTTTACCACTTATTGTTGTATGTGTCCTTGCCTCTAAGTACGAGATGTACGATAATCATCCACACTGCTGGATCTCATTCGCTGACGCGTTGAGCTGGTCAGTGGCAACACCCATCATAACGTTAGGAATGGTACAGTTAATACTCATTGTTTTGTTGGCAAAAGCTTTGATTACTTACCGTAAGTCAGGCGACGTtgaggaaaatgaaaacaagaaaagtgtcATCAAGTCCGGTTTACAAACAGTGGTTTGCATAACAATCACTGTCATTCTAACTTGGATTCTGGGATCACTCTCCTTGAACATCGATCGTGATATCTACCATACCTTTTTCAGCATATTTAACTCGTTGCAGGGTTTTGGATTCTTCCTATTTTATGTGGTCTTACACCCTGAAGTGCGTGAACTAATTCTCGCCGCTTGGGAGTGGAAAAGCACTCTGGTGACACCGTTTGACGAGCATGAGGCCATTGAAATTGAAGAAgagGACAAGcacaaaaagaaaggaaaaggcAAAACTAAGTCTACGAACGACAACAACCAAAGGAAGAACGAAAGTAAACAAGAGAACCAACAAGGTCAGGCCATCGCGAATACCGTACAGACAGCGGCCGATGTAAAAATGACAGCTGCCTCGATAGCGGCCAGTAACAAAATTAGAAACCCTGAGAACGTAAAGGCAATCAAACCTGAGATTAAGAAAGAAACTCGAAAGTCAAGTTTTCCTGGTATAAAAGCGAATTCCACGCCAAGAACTCTTCCTCCCgtcgagaaacaaaagaagaatGTTCCGTCGTCCAAAGGGGCGTTCCCAAGAAGGAAGATAACCCCTCAAGGACCCCCACAGaaatttaTAGAAGATTTAGCGCTTAAACGAAATGCCGCTGATGCTTCATCTACACCTAAGAATAAAAGTCTGCGGTCACCAGCACCATATGCTCAGAAACCACGATCCCCATCCTGGAGTAGGGGAATTCAATTCGAATACAAAGACAATCTCCCTGTTGCAGCTTTCAGCTCTCCACCACCTAACGTCAGGCTCCCGCGTCAGACAGTAGCTCCCAACACCACTCGAAAGAACCAAAAACTAGTGGGCAAGAAGAAGACAACCATGGGGAAAAAAGTTTCCAAGCCATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00182 all species →	Glyco_hydro_19	Chitinase class I	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000726 all species →	Domain	Glycoside hydrolase, family 19, catalytic	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR023346 all species →	Homologous_superfamily	Lysozyme-like domain superfamily	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR050525 all species →	Family	Extracellular Matrix Assembly and Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24020 all species →	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004568 all species →	Molecular Function	chitinase activity	Interproscan
GO:0006032 all species →	Biological Process	chitin catabolic process	Interproscan
GO:0016998 all species →	Biological Process	cell wall macromolecule catabolic process	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_58483.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.