Gene detail

Detailed information of evm.model.contig_58592.1 in Platygyra sinensis

Genomic Location: contig_58592:2696...20585
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_58592.1

ATGTGTTCTGCACAAATCAATGGCAATATGAGTTTTACAGAACAGCAGGAAACTACGGATAAAAGAGACGCCTTTTTGACTGCTTGGAGGAGCTTCTTTCCAACAGCAAAACTTCCCGATACAGACTTTTTGCAATTTTGTGGTTGTGGTAGCGATTCATCAAATGAACATGTTTTGGGGCGATTCAACTTGTGCAAGGAAAGACTTGACAACGCTATAAACGAGATAAAACGCGAGGGATTTATTCTAAAATGGCTTACAGAAGTTCTGAATGTTACAGGTTCGAAAAAAAGTGATTCAGAGCTTGACAAAGTGGTAAACTTGTTCTTCCCAAGTACGTTAAATCAGCCTTCTACGAATTGGCACGGACAGGAGGACCTGGACGTCGACTCTTCGATCGTTGTCATACAGGTAGGCGGAGAGGGTTCGGAATTTCACAATTTCCAAGAGGTGTGTTTGCCAAAGTACGAAGACGGTAATTTATTAAATGTTTGCGACTTAAATGAGGAGTCCAAACAAATTAACAAGGAGACTGAAACGAGATTTCCTCTTGACGAGTCAGAGCTCAATGTTGACGGCAATGTGGACGGAAGTGAAAAGGTGAATTTGGAGTTTGGTTTCAATAACAAACAGGGGAACTCTGGGTCAGCGTCTGGTAAATTATTTAGTGAGGAGAATAATGAATTCGGTGAAGAGAAAAGCTCGCTGCTTGATGATATTAATGTAGCAGAGGGTAATAAACTCTCCGCCAATAACAATACGGAAAAGGGAAGTGAAAACGATGTCAGGCTAACAAGGACAAATGATGAGAGAATCCCCACGGGTTCTTCTGAGGAGGAAGAAATTGAAGAAATGGAAGACGAATCGCACGAGTTAAATTCTCCTGAAGGAGAGAAAGCAGCTGGTATAAGAAATCGAACATTTGCCACCGTCTTCTCGCCTTTAGCTAAGGGGATAAACAAAGCAAGACTAAAAGGAAAGAGACATTTAGCGCGTTCGCCTGGCCCAAAACACAAACGAAGCGACTCGCATGAAAGCACGACAAGTGGCGATGATGTTGATTTGTTGAATAATTCCGAAAGTAAAACTTTTGAGAAACTCGATAGTGAAGTCTTGTTAGACAATGACAATGCTGAAGTTCATGTGAAGTCGTCGAACGATATTTGTGCGGCAAATCAAGAAAGCAAGGCAGCTGACAGCGAAGGTTGTTTGGCACCGAGTTGTCGGATCGATCGTGATCTTGTTGACTTTACTAGACAGGGAACCACGGAGAACAATGCCGTTGAAAAGAAAGACATGAACTCTCAAGAAGACAGGTGCGAGGAGGAAACAATCGAAGAATCACCCGACGTTATTATTGAAGTTGTTGATGAGCTTATATCTTACTTAGAAGGGATCGAAGTTGTGAGTAGTGATGAACTAGAAGGGGAATCGCCTCCTGCTTCTGAGTCAGATGATTTTATGTTATTTGGCGGGGTCATTAGGCCTCGAAAACCCCTCCGATCAAGAAGACAACTGGATTCTGTGCTCTCTGCTGGCAATGTCAGTTTGATGAGCGCAGACTCCTGCGTCAGTCCCTGGGCCATTGATGTGGCAGCCTCTGAGATGCAGTCGGCTGATTCATCAGAGCAAGAAGACAATGCGTCTTGTGATTCTAGTGAGGCCAGACCCAGTGAGGGAACGCCCCCGAGTCTTCCCAGTGTGGAGTCATCCAAGCAGCCAATGGGGGACAGCACCCCTCCTCCGGTCAGGCCTCCTCGCCGTAGCAAAACTGAAAGACGATCCCGCACATTAGATTCGCCAAAGACACTAGGGACTGTTAATGATGACGATGAGGTTTTTGGAAAAGATGATAAGGGATATGAAGGTGACTATGAGACCCTCACTCGATGCTTACCAAAGAGGAGTGCCAGTGAACAAGTTAAACCTTGCACCCAAAGTACAGAAAATGGCAACCACAAGAAACTCCGCAAGGCTAGAGGCTCTCATGTAGTGATTGGAGATGATAATGTTGATTTTCCATCTTCTCCTGTGTCTTCCCCTGCTGGAAGTCCTGCGAAGCATGCAGAACCCAGTTCTGACGACAAAGCTGAAAAACTACACAAGAGGAAGTGGGTTGTAGCTGCTGTTTTAGACAGTGAGAAGGGATACCTGGAATGTCTTAACATGTTATACAAACACATGAAGCCTTTGAAGTTGTCTATTGAGTCATCAGCTCCAATCTTAACATCAGTTGACTACAACAAGATCTTTCACAAGCTGGATGAACTGCATATAATCCACACTGTGTTTTATAACGACCTGGAGGCACGTGTGTCACACTGGACTGACCGCCATCTTATTGGAGATTTGTTTTTGAGTTTGGTGGATCAGTTTGAAGTCTACAGAGAGTACATATTAAACTACAAAACTGCATTATCAACAATAAGAAAATGCAAAGCAAGTAATGAGCAATTCAACAACATCTTTTCTAAGGAACTTAATGTACAGTCTATCCAAGAAGTGACTACCCTTGAAGGTCTTTTCAGTAAGCCAGTGGAACGAGTGGGCAGATACATTGTTGTTCTTGGGGACTTGATCAAACAGACACCAGAGGATCACGCAGATTTTGAACTTTTAACAAATGTATTGAACTCAACCAAGGAGTTTCTTGCAAGAATCAGTGGTGATGACCGAGATGGCGGGAGTATGCCTGGCAGAGTGAAGAGAGATCACAGACTTATAAAGGATGGATTCATTGTCGAGCTTTCAGATGGAGTTCGCAAATTTAGACATCTCTTCCTATTCAATGACTACATCATTTGTACAAAGAGAAAAATAACTGCCAGGAGCGAGCAGTACGTGTGCAAATGGTATGTTCCTCTTCAAGAGTTACAGTTTCATCCCACAGAGATCTCAGAAGCGGCACAAGTCATTCCAGTAACAAGCAAGGCTGATTTTGATTTACTGAAGAGCAGGATCGCGAATACCAAGGCAGAAATCCGACGAGAAGAAGGGGTCAGCGGTTTCCACAGCCCAGACTCCTCGCCTTCAACCAAGCGACGTCGAGCACAGTCCACTTCCAAAATTGTGGAGAAAATGAAGAAGCGTCTAGCTGAGCAGGAAGCTGCCCTGCTCTTGGCCGTTCCCAGTCTTCCGCTGACACTGTATCACAAGCAGGGAAAGGTATGTCACGCAATCGCGCACAAAAGATGTCATATGTGA

Transcript

evm.model.contig_58592.1

ATGTGTTCTGCACAAATCAATGGCAATATGAGTTTTACAGAACAGCAGGAAACTACGGATAAAAGAGACGCCTTTTTGACTGCTTGGAGGAGCTTCTTTCCAACAGCAAAACTTCCCGATACAGACTTTTTGCAATTTTGTGGTTGTGGTAGCGATTCATCAAATGAACATGTTTTGGGGCGATTCAACTTGTGCAAGGAAAGACTTGACAACGCTATAAACGAGATAAAACGCGAGGGATTTATTCTAAAATGGCTTACAGAAGTTCTGAATGTTACAGGTTCGAAAAAAAGTGATTCAGAGCTTGACAAAGTGGTAAACTTGTTCTTCCCAAGTACGTTAAATCAGCCTTCTACGAATTGGCACGGACAGGAGGACCTGGACGTCGACTCTTCGATCGTTGTCATACAGGTAGGCGGAGAGGGTTCGGAATTTCACAATTTCCAAGAGGTGTGTTTGCCAAAGTACGAAGACGGTAATTTATTAAATGTTTGCGACTTAAATGAGGAGTCCAAACAAATTAACAAGGAGACTGAAACGAGATTTCCTCTTGACGAGTCAGAGCTCAATGTTGACGGCAATGTGGACGGAAGTGAAAAGGTGAATTTGGAGTTTGGTTTCAATAACAAACAGGGGAACTCTGGGTCAGCGTCTGGTAAATTATTTAGTGAGGAGAATAATGAATTCGGTGAAGAGAAAAGCTCGCTGCTTGATGATATTAATGTAGCAGAGGGTAATAAACTCTCCGCCAATAACAATACGGAAAAGGGAAGTGAAAACGATGTCAGGCTAACAAGGACAAATGATGAGAGAATCCCCACGGGTTCTTCTGAGgaggaagaaattgaagaaatggAAGACGAATCGCACGAGTTAAATTCTCCTGAAGGAGAGAAAGCAGCTGGTATAAGAAATCGAACATTTGCCACCGTCTTCTCGCCTTTAGCTAAGGGGATAAACAAAGCAAGACTAAAAGGAAAGAGACATTTAGCGCGTTCGCCTGGCCCAAAACACAAACGAAGCGACTCGCATGAAAGCACGACAAGTGGCGATGATGTTGATTTGTTGAATAATTCCGAAAGTAAAACTTTTGAGAAACTCGATAGTGAAGTCTTGTTAGACAATGACAATGCTGAAGTTCATGTGAAGTCGTCGAACGATATTTGTGCGGCAAATCAAGAAAGCAAGGCAGCTGACAGCGAAGGTTGTTTGGCACCGAGTTGTCGGATCGATCGTGATCTTGTTGACTTTACTAGACAGGGAACCACGGAGAACAATGCCGTTGAAAAGAAAGACATGAACTCTCAAGAAGACAGGTGCGAGGAGGAAACAATCGAAGAATCACCCGACGTTATTATTGAAGTTGTTGATGAGCTTATATCTTACTTAGAAGGGATCGAAGTTGTGAGTAGTGATGAACTAGAAGGGGAATCGCCTCCTGCTTCTGAGTCAGATGATTTTATGTTATTTGGCGGGGTCATTAGGCCTCGAAAACCCCTCCGATCAAGAAGACAACTGGATTCTGTGCTCTCTGCTGGCAATGTCAGTTTGATGAGCGCAGACTCCTGCGTCAGTCCCTGGGCCATTGATGTGGCAGCCTCTGAGATGCAGTCGGCTGATTCATCAGAGCAAGAAGACAATGCGTCTTGTGATTCTAGTGAGGCCAGACCCAGTGAGGGAACGCCCCCGAGTCTTCCCAGTGTGGAGTCATCCAAGCAGCCAATGGGGGACAGCACCCCTCCTCCGGTCAGGCCTCCTCGCCGTAGCAAAACTGAAAGACGATCCCGCACATTAGATTCGCCAAAGACACTAGGGACTGTTAATGATGACGATGAGGTTTTTGGAAAAGATGATAAGGGATATGAAGGTGACTATGAGACCCTCACTCGATGCTTACCAAAGAGGAGTGCCAGTGAACAAGTTAAACCTTGCACCCAAAGTACAGAAAATGGCAACCACAAGAAACTCCGCAAGGCTAGAGGCTCTCATGTAGTGATTGGAGATGATAATGTTGATTTTCCATCTTCTCCTGTGTCTTCCCCTGCTGGAAGTCCTGCGAAGCATGCAGAACCCAGTTCTGACGACAAAGCTGAAAAACTACACAAGAGGAAGTGGGTTGTAGCTGCTGTTTTAGACAGTGAGAAGGGATACCTGGAATGTCTTAACATGTTATACAAACACATGAAGCCTTTGAAGTTGTCTATTGAGTCATCAGCTCCAATCTTAACATCAGTTGACTACAACAAGATCTTTCACAAGCTGGATGAACTGCATATAATCCACACTGTGTTTTATAACGACCTGGAGGCACGTGTGTCACACTGGACTGACCGCCATCTTATTGGAGATTTGTTTTTGAGTTTGGTGGATCAGTTTGAAGTCTACAGAGAGTACATATTAAACTACAAAACTGCATTATCAACAATAAGAAAATGCAAAGCAAGTAATGAGCAATTCAACAACATCTTTTCTAAGGAACTTAATGTACAGTCTATCCAAGAAGTGACTACCCTTGAAGGTCTTTTCAGTAAGCCAGTGGAACGAGTGGGCAGATACATTGTTGTTCTTGGGGACTTGATCAAACAGACACCAGAGGATCACGCAGATTTTGAACTTTTAACAAATGTATTGAACTCAACCAAGGAGTTTCTTGCAAGAATCAGTGGTGATGACCGAGATGGCGGGAGTATGCCTGGCAGAGTGAAGAGAGATCACAGACTTATAAAGGATGGATTCATTGTCGAGCTTTCAGATGGAGTTCGCAAATTTAGACATCTCTTCCTATTCAATGACTACATCATTtgtacaaagagaaaaataactgCCAGGAGCGAGCAGTACGTGTGCAAATGGTATGTTCCTCTTCAAGAGTTACAGTTTCATCCCACAGAGATCTCAGAAGcggcaCAAGTCATTCCAGTAACAAGCAAGGCTGATTTTGATTTACTGAAGAGCAGGATCGCGAATACCAAGGCAGAAATCCGACGAGAAGAAGGGGTCAGCGGTTTCCACAGCCCAGACTCCTCGCCTTCAACCAAGCGACGTCGAGCACAGTCCACTTCCAAAATTGTGGAGAAAATGAAGAAGCGTCTAGCTGAGCAGGAAGCTGCCCTGCTCTTGGCCGTTCCCAGTCTTCCGCTGACACTGTATCACAAGCAGGGAAAGGTATGTCACGCAATCGCGCACAAAAGATGTCATATGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF19057 all species →	PH_19	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR037769 all species →	Family	Abr/Bcr	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23182 all species →	BREAKPOINT CLUSTER REGION PROTEIN BCR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_58592.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.