Gene detail

Detailed information of evm.model.contig_59299.1 in Platygyra sinensis

Genomic Location: contig_59299:1051...10475
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_59299.1

ATGATTCTTAATAACAGCTCAGTCTGTAAACATGTAGAGAGTGCTAAACATATTTTCATAAATATATTTTATGGTATTTTAGGTGATATAGTTGGACTTGGTTGGTTAAATGCCAACCAAAAAGCCAGCGACATTGCCTCTGGGATTGTCAGCCGTGTAACCCAGACAGCTATAACAGTAGCATTTGATGAGACAGCTGACAGCTTTGCATTTGATGATGGTGGGCCATTTAAACTTATCAAACTGGCAAATGACATCACTCACAAGAGGATCAAAAGCGCACTTAATACCTTGACCAAGTACAGAGAGGGACCTGCTGCTCATTTAATTGATGTGCTGTTTGGGAATCTGCCTCCTGGGCCTCCATTGCAAATAAGACCCTTTACTGAAGGAGGGGAGACTTCTTCTGTGTTTTTCAATCTTGATCTTGATGATTCACAAAGGCAAGCTGTGACGTTTGCTTTAAGTCAAAGAGAGGTAGCCATTGTCCATGGTCCCCCTGGAACTGGAAAAACTACGACTGTGGTCGAGATCATTATCCAGGCTGTCAAAAATCTCAACATGAAGGTCCTAGCTTGTGCGCCTTCAAATGTTGCTGTAGATAACATGGTTGAGAAGCTGGTAAAAGGCAAACTAAAGGTTGTGAGACTTGGTCATCCTGCTCGTCTTCTCAGTGTTGTTCAAGAGCATTCCCTGGATGCTTTGCTGTCTAATTCTGAAAGCACAGCCATTGTACGAGATGTGAGAAAGGATATTGATGACACACAGGCAAAAGTAAGAAAGTCAAGAAATCTATCAGAAAAGAAGCATCTTAAACAAGAAATAAAATCTCTTCGGGGAGAGCTCAAGCTAAGAGAAGACAAAGCCATGACAGAAATCCTCACCAAAGCTGATGTTGTCTTGGCAACCAATACTAGTGCATCCTCGGATGGCCCCCTTAAACTTGTGAAGTTAGAACACTTTGATTTGGTTGTTATTGACGAGGCTGCACAGTCTCTTGAGGCTGGCTGCTGGATACCATTGCTGCGGGCACCAAGGTGTGTTCTGGCTGGTGATCATCTCCAGTTGCCTCCTACAATCTTATCAACGGAGGCGGCCAAGCAAGGTCTAGAAGTCACGTTAATGGAGAGACTTATAAAACTGCTTGGAGATGGCGCTGTACGCATGTTAACTACTCAGTATAGAATGAATGAGGCAATCATGAAATGGTCATCAGAGAAACTTTACGAGGGTCGACTTAAGGCAGACAGTTCAGTGAAATCTCATTTGCTGAAGGATCTTCCCGGAGTACAGGAAACAGATGAGACGTCACTTCCGCTTGTGTTGATAGACACCGCCGGATGTGACGTCAGGGAAAAGGAGGTGGAAGATGAAGTATCGAAAGGGAATGAAGGCGAAGCTGACATCGTGGCTCTGCATGTTGTGGCCCTTATTACCGCTGGACTTCAACCAAGTGATATCGCCGTCATCGCTCCTTATAACTTGCAGGTGGAGTTTTTAAGACTTCGTCTATCGTCGACGTACCCAGCTCTTGAAATAAAATCCGTTGATGGTTTTCAGGGAAGAGAGAAGGAAGCTGTTGTGATATCATTAGTTCGCTCTAACAAAAAAGGAGAAGTTGGTTTCCTTGCCGAACACAGACGAATTAACGTTGCTATCACCCGAGCCCGACGCCATCTTGCCATTGTAGCTGATTCGGAGACCGTCAGCCATGATGGCTTCCTTAAATCTCTTGTGGAATACATGAGCAGTGAAGGCGAGGTCAGATCTGCTCATGAGTATCTTAAGGATTCACTCACGAATGGGGTTGATTCTTACTCTAACGAACATGATGAAGTTCTGTTGACCCAAACCACAATAGTTTCAAAAACGAAAAAGGGTTTAAATGAAAAGAAAACCACTATTTCTAAGGAAAACCATGAGAAAGAGAGTGATGAGTTAAAGGCTGTTGATGCTGTGGAGAACAGATCAATAAATAATGAAGGTGACTCCAGTACAACCGAGAATGTTTCACAGCAAGGGCCAGTGAATAAAACTCCTGAACCACCGGCTGTTAATGGAAGGATCCCGACAAAGCCTGGCACGAAAAAGATGAACGAACCGCAACTATCTAGTAGCAATAACCGCGACGGCAAAATACAGCCGTGA

Transcript

evm.model.contig_59299.1

ATGATTCTTAATAACAGCTCAGTCTGTAAACATGTAGAGAGTGCTAAACATATTTTCATAAATATATTTTATGGTATTTTAGGTGATATAGTTGGACTTGGTTGGTTAAATGCCAACCAAAAAGCCAGCGACATTGCCTCTGGGATTGTCAGCCGTGTAACCCAGACAGCTATAACAGTAGCATTTGATGAGACAGCTGACAGCTTTGCATTTGATGATGGTGGGCCATTTAAACTTATCAAACTGGCAAATGACATCACTCACAAGAGGATCAAAAGCGCACTTAATACCTTGACCAAGTACAGAGAGGGACCTGCTGCTCATTTAATTGATGTGCTGTTTGGGAATCTGCCTCCTGGGCCTCCATTGCAAATAAGACCCTTTACTGAAGGAGGGGAGACTTCTTCTGTGTTTTTCAATCTTGATCTTGATGATTCACAAAGGCAAGCTGTGACGTTTGCTTTAAGTCAAAGAGAGGTAGCCATTGTCCATGGTCCCCCTGGAACTGGAAAAACTACGACTGTGGTCGAGATCATTATCCAGGCTGTCAAAAATCTCAACATGAAGGTCCTAGCTTGTGCGCCTTCAAATGTTGCTGTAGATAACATGGTTGAGAAGCTGGTAAAAGGCAAACTAAAGGTTGTGAGACTTGGTCATCCTGCTCGTCTTCTCAGTGTTGTTCAAGAGCATTCCCTGGATGCTTTGCTGTCTAATTCTGAAAGCACAGCCATTGTACGAGATGTGAGAAAGGATATTGATGACACACAGGCAAAAGTAAGAAAGTCAAGAAATCTATCAGAAAAGAAgcatcttaaacaagaaataaaatctcttcGGGGAGAGCTCAAGCTAAGAGAAGACAAAGCCATGACAGAAATCCTCACCAAAGCTGATGTTGTCTTGGCAACCAATACTAGTGCATCCTCGGATGGCCCCCTTAAACTTGTGAAGTTAGAACACTTTGATTTGGTTGTTATTGACGAGGCTGCACAGTCTCTTGAGGCTGGCTGCTGGATACCATTGCTGCGGGCACCAAGGTGTGTTCTGGCTGGTGATCATCTCCAGTTGCCTCCTACAATCTTATCAACGGAGGCGGCCAAGCAAGGTCTAGAAGTCACGTTAATGGAGAGACTTATAAAACTGCTTGGAGATGGCGCTGTACGCATGTTAACTACTCAGTATAGAATGAATGAGGCAATCATGAAATGGTCATCAGAGAAACTTTACGAGGGTCGACTTAAGGCAGACAGTTCAGTGAAATCTCATTTGCTGAAGGATCTTCCCGGAGTACAGGAAACAGATGAGACGTCACTTCCGCTTGTGTTGATAGACAccgccggatgtgacgtcaggGAAAAGGAGGTGGAAGATGAAGTATCGAAAGGGAATGAAGGCGAAGCTGACATCGTGGCTCTGCATGTTGTGGCCCTTATTACCGCTGGACTTCAACCAAGTGATATCGCCGTCATCGCTCCTTATAACTTGCAGGTGGAGTTTTTAAGACTTCGTCTATCGTCGACGTACCCAGCTCTTGAAATAAAATCCGTTGATGGTTTTCAGGGAAGAGAGAAGGAAGCTGTTGTGATATCATTAGTTCGCTCTAACAAAAAAGGAGAAGTTGGTTTCCTTGCCGAACACAGACGAATTAACGTTGCTATCACCCGAGCCCGACGCCATCTTGCCATTGTAGCTGATTCGGAGACCGTCAGCCATGATGGCTTCCTTAAATCTCTTGTGGAATACATGAGCAGTGAAGGCGAGGTCAGATCTGCTCATGAGTATCTTAAGGATTCACTCACGAATGGGGTTGATTCTTACTCTAACGAACATGATGAAGTTCTGTTGACCCAAACCACAATAGTTTCAAAAACGAAAAAGggtttaaatgaaaagaaaaccaCTATTTCTAAGGAAAACCATGAGAAAGAGAGTGATGAGTTAAAGGCTGTTGATGCTGTGGAGAACAGATCAATAAATAATGAAGGTGACTCCAGTACAACCGAGAATGTTTCACAGCAAGGGCCAGTGAATAAAACTCCTGAACCACCGGCTGTTAATGGAAGGATCCCGACAAAGCCTGGCACGAAAAAGATGAACGAACCGCAACTATCTAGTAGCAATAACCGCGACGGCAAAATACAGCCGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21138 all species →	SMUBP-2_HCS1_1B	Helicase SMUBP-2/HCS1, 1B domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048761 all species →	Domain	Helicase SMUBP-2/HCS1, 1B domain	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR004483 all species →	Family	Helicase SMUBP-2/Hcs1-like	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_59299.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.