Detailed information of evm.model.contig_59845.4 in Platygyra sinensis

Genomic Location: contig_59845:12836...23013
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15285
all species →		BH3Beclin-1 BH3 domain, Bcl-2-interactingDomainInterproscan
PF04111
all species →		APG6Apg6 BARA domainDomainInterproscan
PF00538
all species →		Linker_histonelinker histone H1 and H5 familyDomainInterproscan
PF17675
all species →		APG6_NApg6 coiled-coil regionCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029318
all species →		DomainBeclin-1, BH3 domainInterproscan
IPR040455
all species →		DomainAtg6, BARA domainInterproscan
IPR038274
all species →		Homologous_superfamilyAtg6/Beclin C-terminal domain superfamilyInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR005818
all species →		DomainLinker histone H1/H5, domain H15Interproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR007243
all species →		FamilyAtg6/BeclinInterproscan
IPR041691
all species →		DomainAtg6/beclin, coiled-coil domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12768
all species →		BECLIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000786
all species →		Cellular ComponentnucleosomeInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006334
all species →		Biological Processnucleosome assemblyInterproscan
GO:0000045
all species →		Biological Processautophagosome assemblyInterproscan
GO:0000407
all species →		Cellular Componentphagophore assembly siteInterproscan
GO:0006914
all species →		Biological ProcessautophagyInterproscan
GO:0006995
all species →		Biological Processcellular response to nitrogen starvationInterproscan
GO:0034271
all species →		Cellular Componentphosphatidylinositol 3-kinase complex, class III, type IInterproscan
GO:0034272
all species →		Cellular Componentphosphatidylinositol 3-kinase complex, class III, type IIInterproscan
GO:0045324
all species →		Biological Processlate endosome to vacuole transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.contig_59845.4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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