Gene detail

Detailed information of evm.model.contig_60709.1 in Platygyra sinensis

Genomic Location: contig_60709:1789...9876
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_60709.1

ATGTTACGAGTTCATGCTCCACGCTTCAAGAAAGTTGTTCAACAGCAGTTTATTGCAAGCAGTGGAATATGGTCCACATGCCGCTATATCCATGCAGGTAATAAGTTTAACCAGAGCCAGAAACCTGAGCCACGGAGGAGCAAGATAAACAAGCTTCTGGTTGCAAATCGCGGTGAAATAGCCATCCGAGTTTTTCGAGCAGCTGCTGAAGCTGGGATAAGGACGGTTGCTATTTACTCTGAGCAGGATGCCAATATGATGCACAGACAGAAAGCTGATGAAGCATATCTCATCGGCAAGGGTATGCCACCGGTCGCTGCTTATTTAAATATTCCAGAGATCATTAAAATAGCAAAGGAAACTGGAACTGATGCCATTCACCCAGGCTATGGATTCCTTTCAGAAAGAGCCAACTTTGCTGAAGCTTGTGTCAAGAATGGCCTTATTTTCATTGGTCCATCCCCCGGAATTGTTAAAATGATGGGTGACAAAGTGGAGGCACGCAGAGTGGCAGTAGAGGCTGGTGTACCTGTGGTTCCTGGCACAGAGAATCCAATCAAAAGTGCTGCAGAGGCTAAAGCCTTCTGCGAGGAGCATGGGCTGCCAGTCATCACTAAAGCGGCATATGGAGGAGGTGGGCGTGGTATGAGAGTTATCCATAGGATGGAAGATGTTGAAGAATTCTTCAATTTAGCCAGCAATGAGGCACATGCTGCTTTTGGAGATGGTTCTATGTTTATTGAAAAGTTTGTTGACCGACCAAGACACATTGAAGTCCAAGTGATGGGTGATGCATACAAGAATGTGGTGCATCTTTATGAGAGGGACTGCTCTGTTCAGAGACGTCACCAAAAGATTGTAGAGATTGCGCCAGCTCCAGATTTAGCTCCTGAAATCAGAGACAAAATGACAAGGGATGCCATAGCTTTATGTAAGGCTGTAAGTTATGAGAATGCTGGCACAGTGGAGTTCTTGTTGGACCCGCAAGGCAATCATTATTTTATGGAGGTTAATGCTCGGCTTCAAGTGGAACACACAGTGACGGAAGAGATAACAGGAGTTGACTTGGTGAGGGCACAGATTGGTGTTGCAGAGGGAAAATCCTTGGAAGAAATTGGACTTCGTCAAGAAGATATCAAAGTTACTGGCTCATCTATTCAAGCTCGTATCACAACAGAAGATCCTGCTAATGACTTCACACCAGATACCGGCAGAATTGAGGTTTTCCGCACTGGTGAAGGAATGGGAATTCGTCTTGATGGAAATTCCATGTACCCTGGTGCTGTGGTCTCCCCCCACTATGACTCCTTGTTGACAAAAGTTATAAGTTATGGTGCAACTCATAGAGATGCTGCTACCAAGCTGCTCCGCGCACTGCGTGAGTTTAGAATAAGAGGTGTCAAGACCAATATTCCTTTTGTGATTAATCTCCTCAAACAAGAAGACTTCGTTGGTGGAGCTGTCACTACTGATTATATTCTGAAAAGACCAGAGTTGTTTAAGGTGGAGAGAGGTCAAAACCGTGCACAGAAGCTGCTTCAATATCTTGGAAATGTCATGGTCAATGGACCCTGTACACCGCTTGCAACTGGACTGAAACCTTCAAAAGAGGCACCTGATGCCCCTGAGCTTCCTCAAAAGTTCATAGTTTTGTTAGATGTAGCTGTTACTGGCTGTGGCAGCGACACGATTAAATACAACCTTCAGGATGCCCATCAGTCACTGCTGGCCACCCGAGTGCGGACTCACGATATGCTGAAGGTCGCGCCTTTTGTGTCGCATTATTTTGCTAATGCGCTACAGTTGGAATGTTGGGGAGTGTCCTTGGGAGCGTTTGTCGAGCTGCGCGAAGCGGTTCCCAACATTCCTTTCCAGATGCTCCTCAGAGGCGCCAATGCTGTGGGTACACCAGTTACCCTGATAATGTGGTGTTTAGTTTGCGAGAAAGCACACCAGAATGGCATGGACATCTTCAGAGTGTTTGACTCTCTGAATTATCTCCTAACTTACAGCTGGGTATTGAAGCATCCGGCCAGGCCGGTGGAGTCGTTGAAGCTGCTATCTCATACACCGGAGAACGTGTCTAATCCATACAAGACTAAATACAACATTGAGTACTACATGAATCTTGCGTCAGAAACTGGTTAG

Transcript

evm.model.contig_60709.1

ATGTTACGAGTTCATGCTCCACGCTTCAAGAAAGTTGTTCAACAGCAGTTTATTGCAAGCAGTGGAATATGGTCCACATGCCGCTATATCCATGCAGGTAATAAGTTTAACCAGAGCCAGAAACCTGAGCCACGGAGGAGCAAGATAAACAAGCTTCTGGTTGCAAATCGCGGTGAAATAGCCATCCGAGTTTTTCGAGCAGCTGCTGAAGCTGGGATAAGGACGGTTGCTATTTACTCTGAGCAGGATGCCAATATGATGCACAGACAGAAAGCTGATGAAGCATATCTCATCGGCAAGGGTATGCCACCGGTCGCTGCTTATTTAAATATTCCAGAGATCATTAAAATAGCAAAGGAAACTGGAACTGATGCCATTCACCCAGGCTATGGATTCCTTTCAGAAAGAGCCAACTTTGCTGAAGCTTGTGTCAAGAATGGCCTTATTTTCATTGGTCCATCCCCCGGAATTGTTAAAATGATGGGTGACAAAGTGGAGGCACGCAGAGTGGCAGTAGAGGCTGGTGTACCTGTGGTTCCTGGCACAGAGAATCCAATCAAAAGTGCTGCAGAGGCTAAAGCCTTCTGCGAGGAGCATGGGCTGCCAGTCATCACTAAAGCGGCATATGGAGGAGGTGGGCGTGGTATGAGAGTTATCCATAGGATGGAAGATGTTGAAGAATTCTTCAATTTAGCCAGCAATGAGGCACATGCTGCTTTTGGAGATGGTTCTATGTTTATTGAAAAGTTTGTTGACCGACCAAGACACATTGAAGTCCAAGTGATGGGTGATGCATACAAGAATGTGGTGCATCTTTATGAGAGGGACTGCTCTGTTCAGAGACGTCACCAAAAGATTGTAGAGATTGCGCCAGCTCCAGATTTAGCTCCTGAAATCAGAGACAAAATGACAAGGGATGCCATAGCTTTATGTAAGGCTGTAAGTTATGAGAATGCTGGCACAGTGGAGTTCTTGTTGGACCCGCAAGGCAATCATTATTTTATGGAGGTTAATGCTCGGCTTCAAGTGGAACACACAGTGACGGAAGAGATAACAGGAGTTGACTTGGTGAGGGCACAGATTGGTGTTGCAGAGGGAAAATCCTTGGAAGAAATTGGACTTCGTCAAGAAGATATCAAAGTTACTGGCTCATCTATTCAAGCTCGTATCACAACAGAAGATCCTGCTAATGACTTCACACCAGATACCGGCAGAATTGAGGTTTTCCGCACTGGTGAAGGAATGGGAATTCGTCTTGATGGAAATTCCATGTACCCTGGTGCTGTGGTCTCCCCCCACTATGACTCCTTGTTGACAAAAGTTATAAGTTATGGTGCAACTCATAGAGATGCTGCTACCAAGCTGCTCCGCGCACTGCGTGAGTTTAGAATAAGAGGTGTCAAGaccaatattccttttgtgattAATCTCCTCAAACAAGAAGACTTCGTTGGTGGAGCTGTCACTACTGATTATATTCTGAAAAGACCAGAGTTGTTTAAGGTGGAGAGAGGTCAAAACCGTGCACAGAAGCTGCTTCAATATCTTGGAAATGTCATGGTCAATGGACCCTGTACACCGCTTGCAACTGGACTGAAACCTTCAAAAGAGGCACCTGATGCCCCTGAGCTTCCTCAAAAGTTCATAGTTTTGTTAGATGTAGCTGTTACTGGCTGTGGCAGCGACACGATTAAATACAACCTTCAGGATGCCCATCAGTCACTGCTGGCCACCCGAGTGCGGACTCACGATATGCTGAAGGTCGCGCCTTTTGTGTCGCATTATTTTGCTAATGCGCTACAGTTGGAATGTTGGGGAGTGTCCTTGGGAGCGTTTGTCGAGCTGCGCGAAGCGGTTCCCAACATTCCTTTCCAGATGCTCCTCAGAGGCGCCAATGCTGTGGGTACACCAGTTACCCTGATAATGTGGTGTTTAGTTTGCGAGAAAGCACACCAGAATGGCATGGACATCTTCAGAGTGTTTGACTCTCTGAATTATCTCCTAACTTACAGcTGGGTATTGAAGCATCCGGCCAGGCCGGTGGAGTCGTTGAAGCTGCTATCTCATACACCGGAGAACGTGTCTAATCCATACAAGACTAAATACAACATTGAGTACTACATGAATCTTGCGTCAGAAACTGGTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF00289 all species →	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR005930 all species →	Family	Pyruvate carboxylase	Interproscan
IPR005481 all species →	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43778 all species →	PYRUVATE CARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004736 all species →	Molecular Function	pyruvate carboxylase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006090 all species →	Biological Process	pyruvate metabolic process	Interproscan
GO:0006094 all species →	Biological Process	gluconeogenesis	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_60709.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.