Gene detail

Detailed information of evm.model.contig_61053.2 in Platygyra sinensis

Genomic Location: contig_61053:22632...31584
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16699 all species →	CSTF1_dimer	Cleavage stimulation factor subunit 1, dimerisation domain	Domain	Interproscan
PF02376 all species →	CUT	CUT domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003350 all species →	Domain	CUT domain	Interproscan
IPR032028 all species →	Domain	Cleavage stimulation factor subunit 1, dimerisation domain	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR038184 all species →	Homologous_superfamily	CSTF1, dimerization domain superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR051649 all species →	Family	CUT Homeobox Domain-Containing Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14057 all species →	TRANSCRIPTION FACTOR ONECUT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_61053.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.