Gene detail

Detailed information of evm.model.contig_61294.2 in Platygyra sinensis

Genomic Location: contig_61294:18580...34963
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_61294.2

ATGTCTGGCGTTTCTCAAACCCCGCCATTTCCTCCACCTGAAGATCAAGATCAGAAGAATATCATTGACAAGCTGGCAAACTTTGTTGCCAGAAATGGAAGCAAATTTGAGGAGATGACCAAGGAGAAACAAAAAGGAAATCCAAAGTTTGCATTTTTGTTTAGCGGAGAATTCTACAACTACTACAGATGGAAAGTTTCCTTTGAAATTGCTCAACAACAGACTCAGCAGCATCTACAAAACCAGCAACAACTAGTACAGCAAGCAGCAGCACAATTTGGTACAAACCCTCAAGCTCATCTAGTGCAGCAAGCGATTGTTCAGCAGTCAATCAACTCAGCACCATGGCAACAAGCACAGCAACAGGCCCAACAACAGATGCAAGCTCTTCAACAACAACAGCAACAACAGCAGCAGCAACAACAACAACAACAACAACAACAGCAACAACAGCAACAGGCTCAAGCTGCTTTATCCATCCCTGTGTACCAACCTGCCCCTGTTGCATTACAGCAGCAACCCAGTGAACTGGATATCACAGAACTAGAAACCTTATTACACAAGATTATGGAGTCCTGCACTAAGGATTCTATATCAAATGGAAAGAATTTCATCTTTACAAATGTAAAGACTTCTTCACAGTGCTATCAGATTTCTCAGTATTTACTCAAGAGAGTGCTTGGTCCTGGAATGCAGTTTCAACACAAGCTTCATATAGTCTACCTTGTCAATGACATTCTTCATCACTGTCAGAGGAAAGGAGCACAAGACCTGAAGAAATCCCTTGAAGACATCATAGTGCCTTTGTTCTTTTGCACACAGATTGGAGAGTCTCCAGAAAATCTGCAGAAAATAACAAAGGTTTTAGGAATCTGGGAGAGTCATAACCTTTTTGAGGCATCTCTCCTACAGGAACTGAAAAACTCTGAAGCTGGCCAAACTAAAGTTGATGCAGCTAGAGAACAAGTCTTCAACCAAGGTTATTATGTTCCACCAGAACGTCATAAACAATATTATCAGCTGCCACAGGAGAACCAGCCAAAATCACAGGCAGACCAGCAACCTCAACAAGGACGAAAAGATAATTTACCACAGAAAAAAGTAGAGGAGAGTTCCCAACAACCAAGTGAAGAGACAAAGGAACAAGCAAAAGATCCTGTTAAGAAAGAAATCAAAGAAGAACATGCAGAGCAAATGGCAGCGGAGGAAAAAGAGAAAATGGAGGAAGCACCCATGCAGCAACCATATCCAGCAGCCCCCTATCAGCAGCATCCTCCATCATTTCCTCCTCCATTTGGTGAACAACGACCGCAGTATTATGGTCATGGTCCTCCACCATTCCCTCCTCATTTTCCTCCTCCACCGTACATGCCAGATTTCAGACACCCACCTCCAGCGATGTATGGCCATATGCCTCCAAACTTCCATGACGAAGGTTACCATGGAAGACCTCCGCCTCCTCCATTCCGTGGTCCACCTCAGCAGTTTGACTACCAGCACCAGAGGCCAGAGTTTGAGCAGTATGATGGTAGAGGACCCCCACCAATGGTGAATGACTACAACCACGGCCGATCACAAGAAGAAGAAGGTTACGGTATGGAGGAATATGACATGCCTCCTGAGCCACCCATCCCTGAACCTATCATACCTACAGCCATGTACTATGAGCTCCCTGCTGGGCTTATGGCTCCCTTAGTAGGGTTGCCGGACGTGGACTACAAGCCAATAGATCCGGCAGCTCTTCGACTTCCCGCGCCACAACCACCAAGTGAAAGACTCCTAGCTGCTGTTGAAGCGTTTTACAGTCCTCCAAGTCATGAGAGGCCCAGGAACAGTGAAGGTTGGGAGCAAAGTGGTTTATTTGAATTTTACAAAGCAAAGCTGAAGTACATTAAAGATCGGGAGGAAGCAGAAAAACTCAAAGTTCAAGAATTCCCACCGAGCAGATCAAGCAGCGATCTCGGTCTCGATCTCGTTCCAGATCTCCCAGGAGACGTCACTCTCGCTCTCGAAGTCGGTCCATGTCTCCGAAGAGAAGAAGATCACGATCCCGGTCAAGATCTCGGTCACGCTCACGTTCAAAATCACGCTCGAGATCTCGATCACGTTCAATCTCGCCAATGTTCAAGTCGAACAGAAGTCCTGGAAGAAAGTCCCACTCCGCCAAGTTTCCAAGCCATGTGTTTCTCTTTCCGTTTAGGATGGGAAGGAGCAGGCCTGGGTAGGAGTCAGCAAGGAATCTATGATCCGATATCAGGAGGGGAGGTTCGGGATAAATTTGACAAGTTCAAGGGAGTCGGTGCTGACATGAAAGATCCATTTGAAGCATACAGGAAAGTAAAAGTTACTCGTTCCTTGGTTCGCGTATCGCTAAATCGGAAGCAAAAGCTGCAGCAAAGGCAGCTGCAAGAGAAGAGAAGGAGAAGGAGAGATTGA

Transcript

evm.model.contig_61294.2

ATGTCTGGCGTTTCTCAAACCCCGCCATTTCCTCCACCTGAAGATCAAGATCAGAAGAATATCATTGACAAGCTGGCAAACTTTGTTGCCAGAAATGGAAGCAAATTTGAGGAGATGACCAAGgagaaacaaaaaggaaatcCAAAGTTTGCATTTTTGTTTAGCGGAGAATTCTACAACTACTACAGATGGAAAGTTTCCTTTGAAATTGCTCAACAACAGACTCAGCAGCATCTACAAAACCAGCAACAACTAGTACAGCAAGCAGCAGCACAATTTGGTACAAACCCTCAAGCTCATCTAGTGCAGCAAGCGATTGTTCAGCAGTCAATCAACTCAGCACCATGGCAACAAGCACAGCAACAGGCCCAACAACAGATGCAAGCtcttcaacaacaacagcaacaacagcagcagcaacaacaacaacaacaacaacaacagcaacaacagcaacaggcTCAAGCTGCTTTATCCATCCCTGTGTACCAACCTGCCCCTGTTGCATTACAGCAGCAACCCAGTGAACTGGATATCACAGAACTAGAAACCTTATTACACAAGATTATGGAGTCCTGCACTAAGGATTCTATATCAAATGGAAAGAATTTCATCTTTACAAATGTAAAGACTTCTTCACAGTGCTATCAGATTTCTCAGTATTTACTCAAGAGAGTGCTTGGTCCTGGAATGCAGTTTCAACACAAGCTTCATATAGTCTACCTTGTCAATGACATTCTTCATCACTGTCAGAGGAAAGGAGCACAAGACCTGAAGAAATCCCTTGAAGACATCATAGTGCCTTTGTTCTTTTGCACACAGATTGGAGAGTCTccagaaaatctgcagaaaataaCAAAGGTTTTAGGAATCTGGGAGAGTCATAACCTTTTTGAGGCATCTCTCCTACAGGAACTGAAAAACTCTGAAGCTGGCCAAACTAAAGTTGATGCAGCTAGAGAACAAGTCTTCAACCAAGGTTATTATGTTCCACCAGAACGTCATAAACAATATTATCAGCTGCCACAGGAGAACCAGCCAAAATCACAGGCAGACCAGCAACCTCAACAAGGACGAAAAGATAATTTACCACAGAAAAAAGTAGAGGAGAGTTCCCAACAACCAAGTGAAGAGACAAAGGAACAAGCAAAAGATCCTGTTAAGAAAGAAATCAAAGAAGAACATGCAGAGCAAATGGCAGCGgaggaaaaagagaaaatgGAGGAAGCACCCATGCAGCAACCATATCCAGCAGCCCCCTATCAGCAGCATCCTCCATCATTTCCTCCTCCATTTGGTGAACAACGACCGCAGTATTATGGTCATGGTCCTCCACCATTCCCTCCTCATTTTCCTCCTCCACCGTACATGCCAGATTTCAGACACCCACCTCCAGCGATGTATGGCCATATGCCTCCAAACTTCCATGACGAAGGTTACCATGGAAGACCTCCGCCTCCTCCATTCCGTGGTCCACCTCAGCAGTTTGACTACCAGCACCAGAGGCCAGAGTTTGAGCAGTATGATGGTAGAGGACCCCCACCAATGGTGAATGACTACAACCACGGCCGATCACAAGAAGAAGAAGGTTACGGTATGGAGGAATATGACATGCCTCCTGAGCCACCCATCCCTGAACCTATCATACCTACAGCCATGTACTATGAGCTCCCTGCTGGGCTTATGGCTCCCTTAGTAGGGTTGCCGGACGTGGACTACAAGCCAATAGATCCGGCAGCTCTTCGACTTCCCGCGCCACAACCACCAAGTGAAAGACTCCTAGCTGCTGTTGAAGCGTTTTACAGTCCTCCAAGTCATGAGAGGCCCAGGAACAGTGAAGGTTGGGAGCAAAGTGGTTTATTTGAATTTTACAAAGCAAAGCTGAAGTACATTAAAGATCGGGAGGAAGCAGAAAAACTCAAAGTTCAAGAATTCCCACCGAGCAGATCAAGCAGCGATCTCGGTCTCGATCTCGTTCCAGATCTCCCAGGAGACGTCACTCTCGCTCTCGAAGTCGGTCCATGTCTCCGAAGAGAAGAAGATCACGATCCCGGTCAAGATCTCGGTCACGCTCACGTTCAAAATCACGCTCGAGATCTCGATCACGTTCAATCTCGCCAATGTTCAAGTCGAACAGAAGTCCTGGAAGAAAGTCCCACTCCGCCAAGTTTCCAAGCCATGTGTTTCTCTTTCCGTTTAGGATGGGAAGGAGCAGGCCTGGGTAGGAGTCAGCAAGGAATCTATGATCCGATATCAGGAGGGGAGGTTCGGGATAAATTTGACAAGTTCAAGGGAGTCGGTGCTGACATGAAAGATCCATTTGAAGCATACAGGAAAGTAAAAGTTACTCGTTCCTTGGTTCGCGTATCGCTAAATCGGAAGCAAAAGCTGCAGCAAAGGCAGCTGCAAGagaagagaaggagaaggagagaTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04818 all species →	CID	CID domain	Repeat	Interproscan
PF01805 all species →	Surp	Surp module	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR035967 all species →	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR039037 all species →	Family	Calcium homeostasis endoplasmic reticulum protein	Interproscan
IPR000061 all species →	Domain	SWAP/Surp	Interproscan
IPR006569 all species →	Domain	CID domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12323 all species →	SR-RELATED CTD ASSOCIATED FACTOR 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12841	CHERP; calcium homeostasis endoplasmic reticulum protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.