Gene detail

Detailed information of evm.model.contig_62234.3 in Platygyra sinensis

Genomic Location: contig_62234:10727...11854
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17221 all species →	COMMD1_N	COMMD1 N-terminal domain	Domain	Interproscan
PF07258 all species →	COMM_domain	COMM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033776 all species →	Domain	COMMD1 N-terminal domain	Interproscan
IPR017920 all species →	Domain	COMM domain	Interproscan
IPR037351 all species →	Family	COMM domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21199 all species →	COMM DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0031398 all species →	Biological Process	positive regulation of protein ubiquitination	Interproscan
GO:0032434 all species →	Biological Process	regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0055070 all species →	Biological Process	copper ion homeostasis	Interproscan
GO:1902306 all species →	Biological Process	negative regulation of sodium ion transmembrane transport	Interproscan
GO:2000009 all species →	Biological Process	negative regulation of protein localization to cell surface	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22557	COMMD1, MURR1; COMM domain containing 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.