Gene detail

Detailed information of evm.model.contig_62540.3 in Platygyra sinensis

Genomic Location: contig_62540:56508...66451
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_62540.3

ATGATTGGTCAAGGTTTGCTGGAGTCTGGTTGGCTTGAGCCTGTACCCAATGCACGTGACGGAGGAGCAGTCTTTAAGGATGAATATGTTCTGTATCAACCTGGAGTGGCTGCATTGCGAGAAGTTTCTACTAAGAAGTCATCACTATTCTGGACAGAGACAGACAAGCCTGCTGACAAAAATGAATCCCTGAGTGAGAGTGTTGAGATCGTCAGTGAGCATGTTGATGATGATAATGATGAAACAGTGCCTCACTGGTTCCGACAGTTAGAGCAGCATGGTGTTGAATCAGCTTTGGAGGAGTTTGATACCAGTGTTTCTCAAGAGGCATCCGGAAAACCAAATAATGGTAAAACAGGACCAAAGCTTCTGGATCTGGATTTAATGAATGGTGTCACCTCAGAGGAAGGAGACAGTGAATTATCACTTAAGGTTGATCTGCAACATTTTGGAGAGCCTGGAAAACTTGGCATTGCATCACCGGACGCCCAGAATGAAGTAGGAGGCTCCAAACTTTCTCTGATAACAGACACCCCTCCACCTCCACTGGAGCAGTATGTGTACAATGAGGGGTACCCCTACACCCCACTGAGACCCAGCAACAGGAAAAATCAAGAAGAAATAGTGCTCAGTACTAGCAATACCCCAGATGAGATATTCAGCGGAGCTATGATGGCCCGGAAGATTGGTGTGGACCGACCTCCTGCTCCTGAAATTGACCAGCTAAGGGAGGATAATGGTGAGAGGTTAGCCATGGAACGTCTGAGGGCTGCACATGCATTCCATCTAAATACTCTGTTGGAACAATTATTGAAGGATGCTGGGCTTTCAGTTGATTGGAAAGAAACAATATTGCCTATTGTAAAGATAATTAGTGAGCAGTTGACTCCTGACGTTCGTAAAGATGATGATATGGATATCTGTACATATGTTAAGTTCAAGAAGATTCCTGGAGGGAGCAAGAGTGACTGTGAGATGATCAGTGGTGTTGTGTTCACAAAAAACATTGCAAATAAGAAGATGGCCAGTGTGTTGAGCAACCCTAAAATTCTGGTTCTTAGTTGTGCCATTGATTATCAGCGTAATGAAAACCGCCTGGCTTCTCTTGATCCTCTTGTTCTCCAAGAATATGAGTTTCTGAAGAACTTTGTAGCAAGAGTGGTTTCTTTACGACCAAACATTTTGTTGGTGGAGAAAACTGTTTCAAGACTGGCCCAGGACATGCTCTTGCAACATGGGATCACTCTGGTCTTGAATGTTAAACCAGTAGTAATTGAGCGGATAGCCAGATGTACTCGAGCAGATGTTCTTTGCTCCATGGAGCAGCTTAGTCGACCACAACTGGGTTCCTGTCAGTCATTCAGAGTTCAGAGATACACCCTTAAGAATGGAGAGTCCAAGACACTCATGTTCATTGATGGCTGCCCAGCGGATCTTTTCTGCACAGTGAATCTCCGAGGAGGCAACAGTTTCGTGTTGGCTAAAGTGAAGCGTATTTTCCAACACATGGTGTATGTTGCTTACAGTCTGAGATTAGAACTGCAGTTTCTCATGGATGAGTTCGCCTTGCCACCAGATACGAACCATTTAATTGAGGAATGGAAAGTGGCGGCTAAAAATTTTGAAAAGAAGATGAAATCAGATGAAGAGAAATTGACTGAAAAAGAGGGCAATGGTGAAGATTATTCACAACAGAAGAAAAACTTGACAGAAACAACACAGCAAGATTCAAGTGAAGGAAGTGAAGTTTTCCTGTCAGCGTTAAAAAGCACCATTTTAGCCAGCTCACCATTTCTTGACTATCCACTCCCATATTTGTTGACAGAAGCAGGTAGAAACATTGCCTTAAGATCTGCTCTGCCTCGAGATATTTACTGGTCGGCACGGTTCGACCCAGATACCCACCCTCATCACTTGACTGAGGAGGGTATGGAGGAGTTTGATTTTTCGAATCTTCACCAGCGCCGTCTAAGTAAACTGGTGTGCAGATTGGAACCTCACCCTCTGTTATCAGCGTCACTGACAATGGATCCTAACGACATACTCTTCCAAGCCTTGGTGTCCGACTTTCGTGCCCAGGGAGGACAAATTCATCTGACGAAAAATGGGATGGCTGTGTCCCGAAGCCAGTTCTAA

Transcript

evm.model.contig_62540.3

ATGATTGGTCAAGGTTTGCTGGAGTCTGGTTGGCTTGAGCCTGTACCCAATGCACGTGACGGAGGAGCAGTCTTTAAGGATGAATATGTTCTGTATCAACCTGGAGTGGCTGCATTGCGAGAAGTTTCTACTAAGAAGTCATCACTATTCTGGACAGAGACAGACAAGCCTGCTGACAAAAATGAATCCCTGAGTGAGAGTGTTGAGATCGTCAGTGAGCatgttgatgatgataatgatgaaacaGTGCCTCACTGGTTCCGACAGTTAGAGCAGCATGGTGTTGAATCAGCTTTGGAGGAGTTTGATACCAGTGTTTCTCAAGAGGCATCCGGAAAACCAAATAATGGTAAAACAGGACCAAAGCTTCTGGATCTGGATTTAATGAATGGTGTCACCTCAGAGGAAGGAGACAGTGAATTATCACTTAAGGTTGATCTGCAACATTTTGGAGAGCCTGGAAAACTTGGCATTGCATCACCGGACGCCCAGAATGAAGTAGGAGGCTCCAAACTTTCTCTGATAACAGACACCCCTCCACCTCCACTGGAGCAGTATGTGTACAATGAGGGGTACCCCTACACCCCACTGAGACCCAGCAACAGGAAAAATCAAGAAGAAATAGTGCTCAGTACTAGCAATACCCCAGATGAGATATTCAGCGGAGCTATGATGGCCCGGAAGATTGGTGTGGACCGACCTCCTGCTCCTGAAATTGACCAGCTAAGGGAGGATAATGGTGAGAGGTTAGCCATGGAACGTCTGAGGGCTGCACATGCATTCCATCTAAATACTCTGTTGGAACAATTATTGAAGGATGCTGGGCTTTCAGTTGATTGGAAAGAAACAATATTGCCTATTGTAAAGATAATTAGTGAGCAGTTGACTCCTGACGTTCGTAAAGATGATGATATGGATATCTGTACATATGTTAAGTTCAAGAAGATTCCTGGAGGGAGCAAGAGTGACTGTGAGATGATCAGTGGTGTTGTGTTCACAAAAAACATTGCAAATAAGAAGATGGCCAGTGTGTTGAGCAACCCTAAAATTCTGGTTCTTAGTTGTGCCATTGATTATCAGCGTAATGAAAACCGCCTGGCTTCTCTTGATCCTCTTGTTCTCCAAGAATATGAGTTTCTGAAGAACTTTGTAGCAAGAGTGGTTTCTTTACGACCAAACATTTTGTTGGTGGAGAAAACTGTTTCAAGACTGGCCCAGGACATGCTCTTGCAACATGGGATCACTCTGGTCTTGAATGTTAAACCAGTAGTAATTGAGCGGATAGCCAGATGTACTCGAGCAGATGTTCTTTGCTCCATGGAGCAGCTTAGTCGACCACAACTGGGTTCCTGTCAGTCATTCAGAGTTCAGAGATACACCCTTAAGAATGGAGAGTCCAAGACACTCATGTTCATTGATGGCTGCCCAGCGGATCTTTTCTGCACAGTGAATCTCCGAGGAGGCAACAGTTTCGTGTTGGCTAAAGTGAAGCGTATTTTCCAACACATGGTGTATGTTGCTTACAGTCTGAGATTAGAACTGCAGTTTCTCATGGATGAGTTCGCCTTGCCACCAGATACGAACCATTTAATTGAGGAATGGAAAGTGGCGgctaaaaattttgaaaagaagatgaaatcagatgaagagaaattgACTGAAAAAGAGGGCAATGGTGAAGATTATTCACAACAGAAGAAAAACTTGACAGAAACAACACAGCAAGATTCAAGTGAAGGAAGTGAAGTTTTCCTGTCAGCGTTAAAAAGCACCATTTTAGCCAGCTCACCATTTCTTGACTATCCACTCCCATATTTGTTGACAGAAGCAGGTAGAAACATTGCCTTAAGATCTGCTCTGCCTCGAGATATTTACTGGTCGGCACGGTTCGACCCAGATACCCACCCTCATCACTTGACTGAGGAGGGTATGGAGGAGTTTGATTTTTCGAATCTTCACCAGCGCCGTCTAAGTAAACTGGTGTGCAGATTGGAACCTCACCCTCTGTTATCAGCGTCACTGACAATGGATCCTAACGACATACTCTTCCAAGCCTTGGTGTCCGACTTTCGTGCCCAGGGAGGACAAATTCATCTGACGAAAAATGGGATGGCTGTGTCCCGAAGCCAGTTCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR043548 all species →	Family	1-phosphatidylinositol-3phosphate-5-kinase	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46715 all species →	1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000285 all species →	Molecular Function	1-phosphatidylinositol-3-phosphate 5-kinase activity	Interproscan
GO:0012506 all species →	Cellular Component	vesicle membrane	Interproscan
GO:0030593 all species →	Biological Process	neutrophil chemotaxis	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032438 all species →	Biological Process	melanosome organization	Interproscan
GO:0052810 all species →	Molecular Function	1-phosphatidylinositol-5-kinase activity	Interproscan
GO:0090385 all species →	Biological Process	phagosome-lysosome fusion	Interproscan
GO:1903426 all species →	Biological Process	regulation of reactive oxygen species biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_62540.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.