Gene detail

Detailed information of evm.model.contig_63368.1 in Platygyra sinensis

Genomic Location: contig_63368:7288...36601
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_63368.1

AGTAAAGCATCTCAAGTAAGACAAGCAGCACAAGTAAGTGAAGTACTGAGCTCAAGTAAGACAGGCACCTCAAGTAAATACAAGCACCTCAAAGTAATTGAAGCATCTCAAGAAAGACAAGCACCTCAAGTAAGACAAGCATCTCAAGTAAGACAAGCATCTCAAGTAACAAAAGCAGCTCAAGTACGACAAGCATCTCAAGTAAGACAAGCATCTCAAGTAAGAAAAGCAAGCTCAAGTAAGACAAGCATCTCAACAGAGCATCTTGAGCAAGCATCTCAAGTAAGCAGAGCATCTCAAGTAAGACAAGCTCCTAAGGTACGTCAAGCACCTGAAGTAAGACAAGCATCTCAAGTAAGTCAAGCACCTCAAGTAAGTAGAGCATCTCAAGTAAGTAGAGCATCTCAAGTAAGACAAGCACCTCAAGTAAGCAGAGCATCTCAAGTAAGCAGAGCATCTCAAGAGGTAGCATATTCTATGGCAAAAGGAAAAGGAAGCAAAAACGTAAAAAAGGCGCGCAGAGCTACAGGGAATGCACCACTAGAGAACGAAGATAATGTGACCGTAGAAAACAATGATGCACTCGACCCTGAAGACTTGGAGTATTTTCAAGATTCTCATAGGAGTTTTGCCTTTTTGCATCAAGTAACAGCAGAGGTCTCTATTAGTGGAAAGAAAAGAAAAAGAAAAAATGTAGATGAAGATGAGGCTGATTATGAGAAGAGACCAAGAACAGCATCAGCAGACCAGGATCACAATGAAAGAACCCTTCTACCCATTAAGAGTAAAGACAGCATTATACATAGGAAAGAGAAGCTATCACCAACAGATGCTCCTCTACTAAACGAGGAAGGAAATCCAGATGAACATATCCTAGAAGAAGCTAATCAAATTTTAGCACCTCCAAACCCTCCACCTGTGTTGAGTTTGGTTGAACTGTTCAATCAAAGACAACAGAAGCTCAATCAAAGAAAACTAAAGATTGCTGAGTTATCAAACGGTATTTTAGAAAACCCCGAGGGCAGTGTATCTGAACTTGGGGAGTTATGTTCTCTATGTGATGAGAAGGATATAGATGTCAGGATAACCACTAAAAAGCTGGCAATGGTTTCTCTTTTGACTGTGTTTAAGGATATCATCCCTGGGTATACAATTCGAGCAACTTCAGAAAAAGAGCAAGGTGTTAAGCTCTCCAAAGAAGTTAAAAAACTGAGAGAATATGAGCAAGGGCTACTGAAATATTACCAGCAATACTTACAAATATTGGAAGAAAGCGTACAAGAGTGTCTGAAGCATCAGAAAGTAGTTGTTACCAATGGCATGGTAAACAAAAAGGCGGCATCTCAGAGTCTGATGCTTGTAGCAGTCCAATGTATGTGTGATCTTCTGACATCCTTACCCCACTTCAATTACCACACGAACCTTATTGCAGTGCTTGTACCTAGAATGAATGATAAATTACTGGATGGCCAGATTTCAAAGTTATGCTGCAATGCTTTCACCACATTGTTTAAACAAGATTCTGTTGGAAGTGTTTCTCTGGAGGTCAGTGCGCTTAATAATGTGGTTGGTAATGGTACTGGTAATGGTATTGGTAATGGTACTGGTACTGGTACTGGTACTGGTACTGGTACTGGTATTGGTAATGGTACTGGTACTGGTATTGGTATTGGTACTGGTACTGGTACTGGTACTGGTACTGGTAATGATGCTGGTAATGATGCTGGTAATGATGCTGGTGCTGGTGCTGGTGGTGCTGGTGGTGCTGGTGCTGGTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGCTGCTGCTGGTGCTGGTGCTGCTGCTGGTACTGGTACTGGTACTGGTGCTGGTACTGGTGCTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGGTGCTGGTGCTGGTGGTGCTGCTGCTGCTGCTGCTGGTGCTGGTGCTGGTGCTGGTACTGGTACTGGTACTGGTAGTAGTAATGGTACTGGTACTGGTACTGGTAATACCTCATTCACAATGTTTGCTTCAGCTGTGAGGATTATTAGTAAGTTTGTGAAAAGTAAAGGATTCAGAGTAGAACCTTGTGTTTTGGAAACATTGCTGTACTTGAGGATTAGTCATGTTGACATACAGTCACTTAAACAGAACAATGAGAAGAAATCAACTGTAGAACTGAAGATTGAAAAGAATAAAAATAGAATGGAAAAGAAGCTGAAAGGAAAGATGTCCAAGAAAGAGAAGAAGAGAAAACGGGAAATGAAAAAACTAGACAAAGAACTTCAAGAAACTGAAGCGGTTGAAAGCCAACAGAAAAGAGCAAAGCTGCAAACTGAGATCCTCAAGTTTGTGTTTGTGACATATTTTCGAGTTTTGAAGACAGTTGGACATTCTCCATTGTTGTCTCCCGTTCTTGAAGGACTCGCCAAGTTTGCTCACCTGATTAATGTTGACTTCTTTAGTGATCTTATGGCAGCACTTCAAACGCTTCTAAACAACAAGGAGCTGACCCTCAGAGAAACTCTCAACTGTGTACTCACAGCGTTTAAAATTCTCTCTGGTCAAGGTGAAGCACTGAACATTGATCCACGAGGATTCTATAGCATGTTGTATTTATCCCTCCTCCAAGTTCATGCTGGGTGTAGCAGCCAAGATGTTCCTGTCGCATTACAGTGTCTAGAGGAAATGCTGAAGAAGAGGCGGAAACAGGTTCCTGTTCAAAGAGTCGCAGGTTTTGTCAAACGCCTTTGTACTGTGAGCTTACAATCACAAGCAAACAGCGCACTGGCTTTTCTAGCCTACGTGAAGACATTTTTACAGTCTCACACGAAAGTGCAGGCCCTACTTGACAGCGATAGCCTGGGCACTGGAGTATTCAGACCTGACGTCAATGACCCGGAGCTCAGTAATGCTGATAGCTCGACGGCTTGGGAATTGGCTCTACTGGGGACAAGGCACTTCCACCCTGCTGTTCGGTTAGTTGCTCATCATGTTGCTGAAGGAGCACCGATTAAAGGCCAGTTGTACTCGTTGGTGAGATTGTGA

Transcript

evm.model.contig_63368.1

TAAGtaaagcatctcaagtaagacaagcagcaCAAGTAAGTGAAGTACTGAGCTCAAGTAAGACAGGCACCTCAAGTAAATACAAGCACCTCAAAGTAATTGAAGCATCTCAagaaagacaagcacctcaagtaagacaagcatctcaagtaagacaagcatctcaagtaacaAAAGCAGCTCAAGTacgacaagcatctcaagtaagacaagcatctcaagtaagaaaagcaagctcaagtaagacaagcatctcaacagagcatcttgagcaagcatctcaagtaagcagagcatctcaagtaagacaagctcCTAAGGTACGTCAAGCAcctgaagtaagacaagcatctcaagtaagtcaagcacctcaagtaagtagagcatctcaagtaagtagagcatctcaagtaagacaagcacctcaagtaagcagagcatctcaagtaagcagagcatctcaaGAGGTAGCATATTCTATGGCAAAAggaaaaggaagcaaaaacgtaaaaaaggCGCGCAGAGCTACAGGGAATGCACCACTAGAGAACGAAGATAATGTGACCgtagaaaacaatgatgcacTCGACCCTGAAGACTTGGAGTATTTTCAAGATTCTCATAGGAGTTTTGCCTTTTTGCATCAAGTAACAGCAGAgGTCTCTATTagtggaaagaaaagaaaaagaaaaaatgtagaTGAAGATGAGGCTGATTATGAGAAGAGACCAAGAACAGCATCAGCAGACCAGGATCACAATGAAAGAACCCTTCTACCCATTAAGAGTAAAGACAGCATTATACATAGGAAAGAGAAGCTATCACCAACAGATGCTCCTCTACTAAACGAGGAAGGAAATCCAGATGAACATATCCTAGAAGAAGCTAATCAAATTTTAGCACCTCCAAACCCTCCACCTGTGTTGAGTTTGGTTGAACTGTTCAATCAAAGACAACAGAAGCTCAATCAAAGAAAACTAAAGATTGCTGAGTTATCAAACGGTATTTTAGAAAACCCCGAGGGCAGTGTATCTGAACTTGGGGAGTTATGTTCTCTATGTGATGAGAAGGATATAGATGTCAGGATAACCACTAAAAAGCTGGCAATGGTTTCTCTTTTGACTGTGTTTAAGGATATCATCCCTGGGTATACAATTCGAGCAACTTCAGAAAAAGAGCAAGGTGTTAAGctctccaaagaagttaaaaaactGAGAGAATATGAGCAAGGGCTACTGAAATATTACCAGCAATACTTACAAATATTGGAAGAAAGCGTACAAGAGTGTCTGAAGCATCAGAAAGTAGTTGTTACCAATGGCATGGTAAACAAAAAGGCGGCATCTCAGAGTCTGATGCTTGTAGCAGTCCAATGTATGTGTGATCTTCTGACATCCTTACCCCACTTCAATTACCACACGAACCTTATTGCAGTGCTTGTACCTAGAATGAATGATAAATTACTGGATGGCCAGATTTCAAAGTTATGCTGCAATGCTTTCACCACATTGTTTAAACAAGATTCTGTTGGAAGTGTTTCTCTGGAGGTCAGTGCGCTTAATAATGTGGTTGGTAATGGTACTGGTAATGGTATTGGTAATGGTACTGGTACTGGTACTGGTACTGGTACTGGTACTGGTATTGGTAATGGTACTGGTactggtattggtattggtactGGTACTGGTACTGGTACTGGTACTGGTAATGATGCTGGTAATGATGCTGGTAATgatgctggtgctggtgctggtggtGCTggtggtgctggtgctggtggtgctggtgctggtgctggtgctggtgctgctgctgctgctggtgctggtgctgctGCTGGTACTGGTACTGGTACTGGTGCTGGTACTGGTgctgctggtgctggtgctggtgctggtgctggtgctggtgctggtgctggtgctgctggtgctggtgctggtggtgctgctgctgctgctgctggtgctggtgctggtgctggtacTGGTACTGGTACTGGTAGTAGTAATGGTACTGGTACTGGTACTGGTAATACCTCATTCACAATGTTTGCTTCAGCTGTGAGGATTATTAGTAAGTTTGTGAAAAGTAAAGGATTCAGAGTAGAACCTTGTGTTTTGGAAACATTGCTGTACTTGAGGATTAGTCATGTTGACATACAGTCACTTAAACAGAACAATGAGAAGAAATCAACTGTAGAACTGAAGattgaaaagaataaaaatagaaTGGAAAAGAAGCTGAAAGGAAAGATGTCCAAGAAAGAGAAGAAGAGAAAACGGGAAATGAAAAAACTAGACAAAGAACTTCAAGAAACTGAAGCGGTTGAAAGCCAACAGAAAAGAGCAAAGCTGCAAACTGAGATCCTCAAGTTTGTGTTTGTGACATATTTTCGAGTTTTGAAGACAGTTGGACATTCTCCATTGTTGTCTCCCGTTCTTGAAGGACTCGCCAAGTTTGCTCACCTGattaatgttgacttctttAGTGATCTTATGGCAGCACTTCAAACGCTTCTAAACAACAAGGAGCTGACCCTCAGAGAAACTCTCAACTGTGTACTCACAGCGTTTAAAATTCTCTCTGGTCAAGGTGAAGCACTGAACATTGATCCACGAGGATTCTATAGCATGTTGTATTTATCCCTCCTCCAAGTTCATGCTGGGTGTAGCAGCCAAGATGTTCCTGTCGCATTACAGTGTCTAGAGGAAATGCTGAAGAAGAGGCGGAAACAGGTTCCTGTTCAAAGAGTCGCAGGTTTTGTCAAACGCCTTTGTACTGTGAGCTTACAATCACAAGCAAACAGCGCACTGGCTTTTCTAGCCTACGTGAAGACATTTTTACAGTCTCACACGAAAGTGCAGGCCCTACTTGACAGCGATAGCCTGGGCACTGGAGTATTCAGACCTGACGTCAATGACCCGGAGCTCAGTAATGCTGATAGCTCGACGGCTTGGGAATTGGCTCTACTGGGGACAAGGCACTTCCACCCTGCTGTTCGGTTAGTTGCTCATCATGTTGCTGAAGGAGCACCGATTAAAGGCCAGTTGTACTCGTTGGTGAGATTGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07540 all species →	NOC3p	Nucleolar complex-associated protein	Family	Interproscan
PF03914 all species →	CBF	CBF/Mak21 family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011501 all species →	Domain	Nucleolar complex-associated protein 3, N-terminal	Interproscan
IPR005612 all species →	Domain	CCAAT-binding factor	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR016903 all species →	Family	Nucleolar complex-associated protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14428 all species →	NUCLEOLAR COMPLEX PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14834	NOC3; nucleolar complex protein 3	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.