Gene detail

Detailed information of evm.model.contig_64342.2 in Platygyra sinensis

Genomic Location: contig_64342:2085...8026
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_64342.2

ATGTCTGCTGTATTAGAAGCGTCAGAAGAAAAATCAAATGGCACTAGACTTGCAAGATTAGTGATTGACGGAGGAACACATGCTCTTAGAACATTTTTCACTCCATCCATCCGCCCGCCACCTTGCGAGGAGTGGCCTGTAACGGGTTGGCGCGACTTACCGGTCGACAGTGATGTGAGTTGTGACGCAAACATTGTCCGAATCAAATGCTTCAGAAATGAGCTATGCCATAGCATTTCTACAGGTGTTACTAATGCGGAGTTTAAAGACAAATGGGACAAGATCTCCAGAGCGCTGGTGGCTTTGGGACTCAGTCAAAAAGAAATAGATCGACTCAAGATGGAACCTATCGATCACGATACCGAACATCGTGTGCAGGCGGAAGTAAAACAGTGGACTCTCGATTTTGAGACACAAATGTACAGTTTAGAGCAAGAAGTAAAGCAGATGAAAACAGAAATCGCAAAAATCCAAGAGTCTTTTGAAGACAAAAATACAAACGAAGTTTCAAACCGCCTCCCAGATGAAGTCCTAGAAGTGTTTGGTCGATCTGAAGAGATAAATCAAGTCACTAAGGCTGTCCAAATAGAGCGAGTAGCTGCTGTTGTTATAACTGGGGGACCAGGGTTTGGAAAGTCGACGGTGGCGAACAAAGTGGCTCATGGACTAGCAGCTAATCAACTCCACAAGACCAAGGTTTTGTTTTGTTCGCTGAGAGCCAAAACAACAGCAAACGATGTTGCTACCTCATTGATACTTTCCTGCAATCAAAACCACTCTCAACCGCCTGATAATCCCCAACACTGGCTTCTGAATTGGAGCAAGCAACAAACGGAGAATGTCACGTTTATTTTGGACAATGCGGACGATGTTCTTGAGTCATCTGAACGATCTCAATTTATTAGCATTTTACGTGATATGAGAATCTTATCAGTACAAAATGTTAGCTTTGTCGTTACCTCTCGGAGAATATTTAAAGATTCTAGTTTGAAAATCACAGAAGTGAGACTGAAACCTTTGCTGCCTGAAGACTCCAAGGAAGTTCTCATTGCACAGGTCAAAGATCATACTATTCTCAAAATGCTTTCCAAAACAACACAGTTAGTCGAGTTGTGTGGTTGTGTGCCCCTTGCACTCTGCATTGTTGGCTCTTTGCTCACAGACTACACAGAGGACGAGCTGATTGATAGTCTTGGGGAAAAGCCCTTGGAGGTACTTAAAGAAGATGAAAGTGATGACAACTCTGTTGAAAAAGCAATCAAGACTTCCGTCGATGTTCTAAGCAAAAGTGAGAAAGAAGCCCTGGTGTTAATGTCCGCTTTTCCTGGTTCGTTTAGTTCTGAAGCTGCCAAAGCAGTAATTACGCAATGCACAAAACGCACCACTCAACCAATATCTATTCTCCGTTCTTTGAAAAATCGATCGCTCATTGAGCAGCCAGCATCACACAGATATCAAATCCATCCTCTTATCCAAGCATTTTTGAAACAAATTGATGAAGATAACCATCTGGTACTCAGGGGAATCAAAGTTGCTTGTACATACTTCATATCTCGCCTTATTGATGGTGGTAACTTGTACTGGAGCAAGGACACATGCAAAGACAGTATTCAATGTTTCAATGAAGACAGGCATAACTTTGAGTATTTCCTCAAACTCTGTATTTTTGGCTTAATGAAGAAAGATCCAGATAGTGTAGCAATTATGGAAAACTTAGTGATGAAAGTTTCCCAAATTTCTTCAATATATTTGTACCTGGAAATGTGTCTGCTTCCAAATGTTTATGTTGAATTTCTTCAATTATCATTTGATTTTCTGATATCCAGCAAACAACCTGCCAGCAAACAAGTGGAGCTGCTTTGCCTCCTTGGGCATGAAAGTAGAAGAGCAGGAAATTTCAACAAGTACAAAGAGTTCCAGGAAAAGGCCATAGAAGTGCACTCTAAAAATCCAGAAGATTTTGACAGAGAAAAGGTGTCAGAGGCTTTTTTCCATAACAACTTTGCACGTTATCTGGCAGAACAAGGAAAGTTAGATGAAGCAAAAGAAAAGTTCGACTTTTGTCTGGGAATATGTGAGGAAAATCTGTCTTTTGATTACATGTATGTGCAGAAAGCCATAACTTTGCTTTTTGCTGGCAATGAAGACAACCGTCGCAATGAGCGTCACAAGGCAGAATGTAAATTGAATGAAGCATTAAGTCTGTATCAAAAGGTTCTTGGCAAGCATATTATGACTGCTTGGCTTCATAGAGAACTGGGGGATTTTTACCTTTTTCATGCTGAGAAAACTTTAGGATCAACAGAAGACAGGCAGAAATCTATTATACTATATGGGGAAGCTTTACAAATGATGACAGACCTTGGAATGAAGGACCACAAAGAGTGCATTCTAAGCCTGATAAACTTAGGTATCTGTCACCAGTCACAAGGCAGCCTAGAGGAAGCAATGAAATTGTATCAAGAAGCTTTCAATATTGCAGAAAGAGAGTTAGGAGAAAACCATAAATGGAAAGTCTACATTAAGACTCAAATGGCATACTGTCACAAAGTAAAAGGAGATATGAAGGAGGCAGCTGCTCTAAAAGATGATGCAATGGAGATGAGTGACATGTGTGAAAAAGAAACAAACAGAAGAAAAGAAGAAAAAGAGGAAAATGAAAGAAGGACAAGAGCCCGATCTCACTCAGTGGAAGAAGCCGAGGAGGGTGAAGTTACAGACAGTTGCTCAGATAACGATTCAGACAATGAAGACAGGATCAGCAGAAATATTCTTGAAAAGCTAGGTCATTCACAAGAATTACACAACATGTTATGCAACAGGCACTTAAGGGAAATGATCAGAGAAATTGATTCTTCAAAAGACCCTGGGAAGCTTCTTGGTCAGGCCATGCAAATCCCTATTTTCACAGAGTTCGCAGATGAATGTTTAAGAATTGTAGAACCACAAGATGAAAGTGAAATGGTGCACTGA

Transcript

evm.model.contig_64342.2

GGATGTCTGCTGTATTAGAAGCGTCAGAAGAAAAATCAAATGGCACTAGACTTGCAAGATTAGTGATTGACGGAGGAACACATGCTCTTAGAACATTTTTCACTCCATCCATCCGCCCGCCACCTTGCGAGGAGTGGCCTGTAACGGGTTGGCGCGACTTACCGGTCGACAGTGATGTGAGTTGTGACGCAAACATTGTCCGAATCAAATGCTTCAGAAATGAGCTATGCCATAGCATTTCTACAGGTGTTACTAATGCGGAGTTTAAAGACAAATGGGACAAGATCTCCAGAGCGCTGGTGGCTTTGGGACTCAGTCAAAAAGAAATAGATCGACTCAAGATGGAACCTATCGATCACGATACCGAACATCGTGTGCAGGCGGAAGTAAAACAGTGGACTCTCGATTTTGAGACACAAATGTACAGTTTAGAGCAAGAAGTAAAGCAGATGAAAACAGAAATCGCAAAAATCCAAGAGTCTTTTGAAGACAAAAATACAAACGAAGTTTCAAACCGCCTCCCAGATGAAGTCCTAGAAGTGTTTGGTCGATCTGAAGAGATAAATCAAGTCACTAAGGCTGTCCAAATAGAGCGAGTAGCTGCTGTTGTTATAACTGGGGGACCAGGGTTTGGAAAGTCGACGGTGGCGAACAAAGTGGCTCATGGACTAGCAGCTAATCAACTCCACAAGAccaaggttttgttttgttcgctGAGAGCCAAAACAACAGCAAACGATGTTGCTACCTCATTGATACTTTCCTGCAATCAAAACCACTCTCAACCGCCTGATAATCCCCAACACTGGCTTCTGAATTGGAGCAAGCAACAAACGGAGAATGTCACGTTTATTTTGGACAATGCGGACGATGTTCTTGAGTCATCTGAACGATCTCAATTTATTAGCATTTTACGTGATATGAGAATCTTATCAGTACAAAATGTTAGCTTTGTCGTTACCTCTCGGAGAATATTTAAAGATTCTAGTTTGAAAATCACAGAAGTGAGACTGAAACCTTTGCTGCCTGAAGACTCCAAGGAAGTTCTCATTGCACAGGTCAAAGATCATACTATTCTCAAAATGCTTTCCAAAACAACACAGTTAGTCGAGTTGTGTGGTTGTGTGCCCCTTGCACTCTGCATTGTTGGCTCTTTGCTCACAGACTACACAGAGGACGAGCTGATTGATAGTCTTGGGGAAAAGCCCTTGGAGGTACTTAAAGAAGATGAAAGTGATGACAACTCTGTTGAAAAAGCAATCAAGACTTCCGTCGATGTTCTAAGCAAAAGTGAGAAAGAAGCCCTGGTGTTAATGTCCGCTTTTCCTGGTTCGTTTAGTTCTGAAGCTGCCAAAGCAGTAATTACGCAATGCACAAAACGCACCACTCAACCAATATCTATTCTCCGTTCTTTGAAAAATCGATCGCTCATTGAGCAGCCAGCATCACACAGATATCAAATCCATCCTCTTATCCAAGCatttttgaaacaaattgaTGAAGATAACCATCTGGTACTCAGGGGAATCAAAGTTGCTTGTACATACTTCATATCTCGCCTTATTGATGGTGGTAACTTGTACTGGAGCAAGGACACATGCAAAGACAGTATTCAATGTTTCAATGAAGACAGGCATAACTTTGAGTATTTCCTCAAACTCTGTATTTTTGGCTTAATGAAGAAAGATCCAGATAGTGTAGCAATTATGGAAAACTTAGTGATGAAAGTTTCCCAAATTTCTTCAATATATTTGTACCTGGAAATGTGTCTGCTTCCAAATGTTTATGTTGAATTTCTTCAATTATCATTTGATTTTCTGATATCCAGCAAACAACCTGCCAGCAAACAAGTGGAGCTGCTTTGCCTCCTTGGGCATGAAAGTAGAAGAGCAGGAAATTTCAACAAGTACAAAGAGTTCCAGGAAAAGGCCATAGAAGTGCACTCTAAAAATCCAGAAGATTTTGACAGAGAAAAGGTGTCAGAGGCTTTTTTCCATAACAACTTTGCACGTTATCTGGCAGAACAAGGAAAGTTAGATGAAGCAAAAGAAAAGTTCGACTTTTGTCTGGGAATATGTGAGGAAAATCTGTCTTTTGATTACATGTATGTGCAGAAAGCCATAACTTTGCTTTTTGCTGGCAATGAAGACAACCGTCGCAATGAGCGTCACAAGGCAGAATGTAAATTGAATGAAGCATTAAGTCTGTATCAAAAGGTTCTTGGCAAGCATATTATGACTGCTTGGCTTCATAGAGAACTGGGGGATTTTTACCTTTTTCATGCTGAGAAAACTTTAGGATCAACAGAAGACAGGCAGAAATCTATTATACTATATGGGGAAGCTTTACAAATGATGACAGACCTTGGAATGAAGGACCACAAAGAGTGCATTCTAAGCCTGATAAACTTAGGTATCTGTCACCAGTCACAAGGCAGCCTAGAGGAAGCAATGAAATTGTATCAAGAAGCTTTCAATATTGCAGAAAGAGAGTTAGGAGAAAACCATAAATGGAAAGTCTACATTAAGACTCAAATGGCATACTGTCACAAAGTAAAAGGAGATATGAAGGAGGCAGCTGCTCTAAAAGATGATGCAATGGAGATGAGTGACATgtgtgaaaaagaaacaaacagaagaaaagaagaaaaagaggaaaatgaAAGAAGGACAAGAGCCCGATCTCACTCAGTGGAAGAAGCCGAGGAGGGTGAAGTTACAGACAGTTGCTCAGATAACGATTCAGACAATGAAGACAGGATCAGCAGAAATATTCTTGAAAAGCTAGgTCATTCACAAGAATTACACAACATGTTATGCAACAGGCACTTAAGGGAAATGATCAGAGAAATTGATTCTTCAAAAGACCCTGGGAAGCTTCTTGGTCAGGCCATGCAAATCCCTATTTTCACAGAGTTCGCAGATGAATGTTTAAGAATTGTAGAACCACAAGATGAAAGTGAAATGGTGCACTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF21373 all species →	ZNHIT3_C	Zinc finger HIT domain-containing protein 3, C-terminal domain	Domain	Interproscan
PF18738 all species →	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR048371 all species →	Domain	Zinc finger HIT domain-containing protein 3, C-terminal domain	Interproscan
IPR041249 all species →	Domain	DZIP3-like HEPN domain	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691 all species →	REGULATOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_64342.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.