Gene detail

Detailed information of evm.model.contig_65342.2 in Platygyra sinensis

Genomic Location: contig_65342:1664...12930
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_65342.2

ATGATTGCTGGTTTACTGGATGATGATGATGACGGTAAGAACCTTCTAGATGCTACACGAGGCTTGGCAGGTGCCTTTTCGAATCTTCTGAAAGCTGCCCAGGAAGGAGGTGGAGCAGACAGTGAGTCTAGAGGCAAGTTGTTGTCAGCTGCTGGCAATGTGGGTTCATCTGGAGCAACACTGTTGCAGTACATGGGTGAACCAGAAGTTGATCAACAAACTCAAGAAATGTTACTGGCTCTGGCTCAAGCTGTGGCTAATGCAACAGGAGCTCTGGTCTTAAAAGCCAAGAATGTCGCTAGTCAGTCTAATGACACTGGAGCTCAAGGCAAGGTGATCACTGCAGCAAAGGAGACAGCCAGAACCACAGCACAGCTGGTAGCTTGTGTTAAGGTGGTTGTTCCATCCATAAGCAGTCACATGTGCCAGGAACAAGTTGTCGAAGCTGCAAAACTTGTTGCTACAGCTGTTAATGACACTGAAGGAGCTTGCAAGGAAGCAGCTCCTGAAGACTCTGACTTGCTACGAGAGCTAATGACCGCAGCGCAAGCTGTACGGGATGCTCTAAATAGTCTGCTGGTGAAAGTGCGAGATGGAGGCTGGGATGCTCAACAAGCTGGACAGTATGATGCAGCATGTGATGACATTTTAGGAGCTACAGACAGACTGTTTAACAGTATGGGGAATGCAGGAGAGATGGTTAAACAGGCCAAGATCTTAGCTCAGGCATCATCATCATTAGTAACTGGAATCAAAGCAGAAGCTGAAACTGAGGATGACTCAGATTCACAGAAACGTCTCCTTGCTGCTGCAAAGGTGTTAGCTGATGCCACTGCAAAACTTGTGGAAGCAGCCAAGGGAGCAGCCAGAAACCCTAATGCTGCTGACCAGCAGCAGAAGCTCAAACAGGCAGCAGAAGATTTGAGATCAGCAACAAATGCAGCTGCCAGTGATGCACTGAAAAAGAAGCTAGTCAAAAGACTCGAGGCGGCAGCTAAGGAGGCCACTGGCCAGGCTACACAGCTAATTGCTGCAGCTCGCAGTGCAGGACCATCTAATCGGAATCAGGCATCACAGCAACAGCTGAGCGACCAGTGCAAACCAGTAGAAGAACACATCAACCAACTTGTTGAAGCTCTTAGAGACACTGCAAGAAATCCTGACATTGCTGCTCCTCAGTTGGCTCTGATAAATGCCTCAAAAGAGTTTATTCAGCCAACATCAAAGCTTGTTGCCAACTCCAAAGCTGCACTTCCAACCATTGGAGATCCAATCACAGCAACACAGCTGGCAAACTTTGCCAAGTCAACTGCTTCCTCACTGGGAGACTTACGAGATGCTGCAGATAAGGCTGCAGAGGCCTGTGGAACACTTGAGATTGACAGTGCTTTGGATACAGTTGGTTCTCTTGGTCGTGACTTGGAGGCATATGAGAAGAGTGCCGAGGATGGAAAACTGCTTCCCTTACCAGGAGATACTGCAGAATCTTGTGGTCTTGAACTTGGTGCCACATCAAAGTCTGTTGGATCATCAATGGCACAGCTCTTAACTGCTGCTTCACAGGGTAATGAAAGCTACACAGGTATTGCAGCAAGGGACACAGCCAGCGCCCTGCGTGTTCTGACTGCAGCAGCCAGGGGCGTCGCAGCTACAGCAGATGACAGAGCCTTGCAGATGAATCTTATCAAGGCAACCCAGGCTGTAGTTGCTGAGTCAGCAAAATTAATTCACGAGGCAAAGAATGCAGTGAACAATCCTGGAGACCCTAACAACCAGCCCAGACTAGCACAAGCTGCCAAAGATGTGTCCCATGCATTAAACAACTGTGTGAACTACTTGCCTGGTCAAAGAGATGTCGATGAAGCTATAAAGGCTGTCGTCAACTCCAGTCAGAGTTTAGCTGTAGAGGATTTCCCACCCACCTCTGAAGGGTATCAAGTGGTCCAGGAGAAGCTCAGTATGACAGGTGCAGCCCTCAATGCAGCAGCCAGTGACATGGTGACAGCATCACGAGGAACATCCAATCAACTGGCTGTGTCTACTAAGAAGTTTTCACAGTCTTACCAAGATCTGTTGGACAGTGGAATGAAACTGGCTGGGCAGGCCAAGGATGATGCAGCTAAAGATTCTCTGGTACGCAATCTGAAGAACACATCAACAGCATCTAGTAAACTCCTCCTGGCAGCTAAATCCTTGGTGTCAGATCCCAATGCACCTAATGCTAAGAACTCATTGGCTAATGCTGCAAGGTACATATGA

Transcript

evm.model.contig_65342.2

ATGATTGCTGGTTTactggatgatgatgatgacggtAAGAACCTTCTAGATGCTACACGAGGCTTGGCAGGTGCCTTTTCGAATCTTCTGAAAGCTGCCCAGGAAGGAGGTGGAGCAGACAGTGAGTCTAGAGGCAAGTTGTTGTCAGCTGCTGGCAATGTGGGTTCATCTGGAGCAACACTGTTGCAGTACATGGGTGAACCAGAAGTTGATCAACAAACTCAAGAAATGTTACTGGCTCTGGCTCAAGCTGTGGCTAATGCAACAGGAGCTCTGGTCTTAAAAGCCAAGAATGTCGCTAGTCAGTCTAATGACACTGGAGCTCAAGGCAAGGTGATCACTGCAGCAAAGGAGACAGCCAGAACCACAGCACAGCTGGTAGCTTGTGTTAAGGTGGTTGTTCCATCCATAAGCAGTCACATGTGCCAGGAACAAGTTGTCGAAGCTGCAAAACTTGTTGCTACAGCTGTTAATGACACTGAAGGAGCTTGCAAGGAAGCAGCTCCTGAAGACTCTGACTTGCTACGAGAGCTAATGACCGCAGCGCAAGCTGTACGGGATGCTCTAAATAGTCTGCTGGTGAAAGTGCGAGATGGAGGCTGGGATGCTCAACAAGCTGGACAGTATGATGCAGCATGTGATGACATTTTAGGAGCTACAGACAGACTGTTTAACAGTATGGGGAATGCAGGAGAGATGGTTAAACAGGCCAAGATCTTAGCTCAGGCATCATCATCATTAGTAACTGGAATCAAAGCAGAAGCTGAAACTGAGGATGACTCAGATTCACAGAAACGTCTCCTTGCTGCTGCAAAGGTGTTAGCTGATGCCACTGCAAAACTTGTGGAAGCAGCCAAGGGAGCAGCCAGAAACCCTAATGCTGCTGACCAGCAGCAGAAGCTCAAACAGGCAGCAGAAGATTTGAGATCAGCAACAAATGCAGCTGCCAGTGATGCACTGAAAAAGAAGCTAGTCAAAAGACTCGAGGCGGCAGCTAAGGAGGCCACTGGCCAGGCTACACAGCTAATTGCTGCAGCTCGCAGTGCAGGACCATCTAATCGGAATCAGGCATCACAGCAACAGCTGAGCGACCAGTGCAAACCAGTAGAAGAACACATCAACCAACTTGTTGAAGCTCTTAGAGACACTGCAAGAAATCCTGACATTGCTGCTCCTCAGTTGGCTCTGATAAATGCCTCAAAAGAGTTTATTCAGCCAACATCAAAGCTTGTTGCCAACTCCAAAGCTGCACTTCCAACCATTGGAGATCCAATCACAGCAACACAGCTGGCAAACTTTGCCAAGTCAACTGCTTCCTCACTGGGAGACTTACGAGATGCTGCAGATAAGGCTGCAGAGGCCTGTGGAACACTTGAGATTGACAGTGCTTTGGATACAGTTGGTTCTCTTGGTCGTGACTTGGAGGCATATGAGAAGAGTGCCGAGGATGGAAAACTGCTTCCCTTACCAGGAGATACTGCAGAATCTTGTGGTCTTGAACTTGGTGCCACATCAAAGTCTGTTGGATCATCAATGGCACAGCTCTTAACTGCTGCTTCACAGGGTAATGAAAGCTACACAGGTATTGCAGCAAGGGACACAGCCAGCGCCCTGCGTGTTCTGACTGCAGCAGCCAGGGGCGTCGCAGCTACAGCAGATGACAGAGCCTTGCAGATGAATCTTATCAAGGCAACCCAGGCTGTAGTTGCTGAGTCAGCAAAATTAATTCACGAGGCAAAGAATGCAGTGAACAATCCTGGAGACCCTAACAACCAGCCCAGACTAGCACAAGCTGCCAAAGATGTGTCCCATGCATTAAACAACTGTGTGAACTACTTGCCTGGTCAAAGAGATGTCGATGAAGCTATAAAGGCTGTCGTCAACTCCAGTCAGAGTTTAGCTGTAGAGGATTTCCCACCCACCTCTGAAGGGTATCAAGTGGTCCAGGAGAAGCTCAGTATGACAGGTGCAGCCCTCAATGCAGCAGCCAGTGACATGGTGACAGCATCACGAGGAACATCCAATCAACTGGCTGTGTCTACTAAGAAGTTTTCACAGTCTTACCAAGATCTGTTGGACAGTGGAATGAAACTGGCTGGGCAGGCCAAGGATGATGCAGCTAAAGATTCTCTGGTACGCAATCTGAAGAACACATCAACAGCATCTAGTAAACTCCTCCTGGCAGCTAAATCCTTGGTGTCAGATCCCAATGCACCTAATGCTAAGAACTCATTGGCTAATGCTGCAAGGTACATATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21692 all species →	Talin_R4	Talin, R4 domain	Domain	Interproscan
PF09141 all species →	Talin_middle	Talin, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036723 all species →	Homologous_superfamily	Alpha-catenin/vinculin-like superfamily	Interproscan
IPR049108 all species →	Domain	Talin, R4 domain	Interproscan
IPR035964 all species →	Homologous_superfamily	I/LWEQ domain superfamily	Interproscan
IPR015224 all species →	Domain	Talin, central	Interproscan
IPR036476 all species →	Homologous_superfamily	Talin, central domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19981 all species →	TALIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0001726 all species →	Cellular Component	ruffle	Interproscan
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_65342.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.