Genomic Location: contig_65548:60463...74037
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families
| CDS |
| evm.model.contig_65548.6 |
| Transcript |
| evm.model.contig_65548.6 |
| Protein |
| evm.model.contig_65548.6 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002168 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00085 all species → | Thioredoxin | Thioredoxin | Domain | Interproscan |
| PF09409 all species → | PUB | PUB domain | Domain | Interproscan |
| PF01841 all species → | Transglut_core | Transglutaminase-like superfamily | Family | Interproscan |
| PF04721 all species → | PAW | PNGase C-terminal domain, mannose-binding module PAW | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR036249 all species → | Homologous_superfamily | Thioredoxin-like superfamily | Interproscan |
| IPR002931 all species → | Domain | Transglutaminase-like | Interproscan |
| IPR013766 all species → | Domain | Thioredoxin domain | Interproscan |
| IPR050883 all species → | Family | Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase | Interproscan |
| IPR017937 all species → | Conserved_site | Thioredoxin, conserved site | Interproscan |
| IPR038680 all species → | Homologous_superfamily | PAW domain superfamily | Interproscan |
| IPR018997 all species → | Domain | PUB domain | Interproscan |
| IPR036339 all species → | Homologous_superfamily | PUB-like domain superfamily | Interproscan |
| IPR006588 all species → | Domain | Peptide N glycanase, PAW domain | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12143 all species → | PEPTIDE N-GLYCANASE PNGASE -RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000224 all species → | Molecular Function | peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006515 all species → | Biological Process | protein quality control for misfolded or incompletely synthesized proteins | Interproscan |
| GO:0006516 all species → | Biological Process | glycoprotein catabolic process | Interproscan |
| GO:0006517 all species → | Biological Process | protein deglycosylation | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01456 | E3.5.1.52, NGLY1, PNG1; peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase | EC:3.5.1.52 | Protein processing in endoplasmic reticulum | ko04141 | deepkoala |
Genes whose expression across the transcriptome samples of Platygyra sinensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Platygyra sinensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |