Gene detail

Detailed information of evm.model.contig_67091.1 in Platygyra sinensis

Genomic Location: contig_67091:2700...31085
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_67091.1

ATGAAACGTTCTCAGTCAGATTCGTCGGGGGTACCCCCGGCGAAGAAGCAGGTTTTAACAAAGATGATCCCGCCGATGAACATTGGTTCTGTTTCAACAGAGGATGAAATGAACTTAAAGGTCTTGCAGTTTCAAAATAAGAAACTTGGAGAGAGACTGGAAGAACTAAAGATAGAAGAAGAGAAGTTAAAAGAACAAGTGGAAGAGCTCAAGAAACAGAGAGAATCTGATCTGGATATTATCTCTGTCATCAACAGACATTGGATGCAGCTTGATGAAGACATCAAGACCATATTACAAAGATATGAAGGTATTGTGGAGGAGGACTCAGAGCAGACATCTAATGAGGCTACTCTTTCATACTTGGACTACCTGGCCAATTTAGACTCAGAAGAAGTTCGACAAGAAGTAGCCAAGAGATCTGCGGCCACTAAAGAACACACAAGAAAGCTGTTACACTATGTAGAAATCTCTGGGCCATACTTATCCAAAGTGTCAAAAGAGAAGCCAAGTGATGATAATCAAGCAGAGGAAGAAGGACATAAAGATCAGCAAGGCCAAAAAGAAACAGTTCCAGAGGCAAGTTCTACGGAACAACCAAAACTCAACTTGGATACAGACAACAAACAGCTAAGGGAGTTGGTTACCTCGCTTCATCAAAAACAGCAGACTACATCACTTGAGTTTTCAGAAATTCGCGATAAGTATGCCTTGGCTCAAAAAGAGATTGCACAGCTTAACACTGAACTTCAAGATGCCAAATACGAACTTCAAAAAGCCGACCACAGGGTGGACAACTTGGTGAAGAGGCTTAATGAACTGGAAGATGTGAATAAGAGACTGCGTGAAGGAAATACAGCTCTAGGTGAACCAGGGGAAAGTGGACCAGCACAGATAAACCAAATGCCAGAAAGTGCTGTTCTTCAGTCAGCCCCATACAAATGTTTGCAATCACAGTTTTCAGTTCTGTATGGAGAGGTCACCCAGCTTCGGCAGCAACTTGATGACACCCGCCGTGTTCTCAGCACCACTAAAACACAGCATGTCCTACAACTGGAACAAGTTGAGTCAAACAATGTGACAATACAAAAGAAATACAAGGCTGAAGTCAGTGAACTCCACGATGCATTACTGCAAGTAAAGAGAGACTATGACCTGCTAAGAATGGAGTTTGAACAAAACCTCAAAGCAAATGAACAGACAGGTCCAATGACAAAAGAGATGAGCCACATGCTGAATAGTTTACAGAGTCACAACCAGCAACTGAAGGTTGAAGTGTCGAGATACAAAAGGAAATTCAGCGAGTCCCAAGTTCAAGTCGTCAAGCTAACTGAAGAACTTAAGAATACCAAGGAGTCAGGCAAGAAGGCAGAATCAGTTGAGGAAGACAACCAGGTGGAAGGTCAACAGGAACCAGGTAAAGATGAACCAGAATCCAAAGCTTCAAAATCAGAAGAAGAAGGAGAGATAGAAGAAGCTGAAGACATAGCGTCAAGCAGTAAATCCCGTGACATGGAGCTCAAGGAACTGCGGGCAAGCTTGAAAAAATCCCAGGAAACTCAGAAAGAGATGAAGCTTGTGTTGGATGTTTACAAAGGGGCAGCGAAAGATCTCAGAGATAAAGTTGAGCTTCTGTCGGAGGAGAAACGTCTTAAAGAGCAGATAGAGGAGCAAAGAGCTCGAATAGAAAGCCTTGAGAAAGAATTGGAGAAACACAAAGGTGCTCTGGCTGATGAGGAGGCGATACGAAGGCTCAAAATGGCTGAGGAAACAATCGAACAACTACAGAAGAATCTAGCTGCAACGAAACAGGAGGAAGATGCTGTACTAGCGGAAATGGAGTTCACTGGACAAGCTTTTGAGGAGATGCAAGAACAGAACGTTCGACTATTACAACAGCTGAGAGAAAAAGATGATGCTAACCTGAAGCTTATGTCTGAGCGCATCAAAGGAAATCAGATTCAAAAACAGATCCGAGAGGAGATGGACGTGCTGGCGGATCAAGTGACCTCCCTGAACACCCACCGTGAAACACAGACTCAGTTGGTGAAGAAACTTGAGGAGAGAGAAAAGGCGTTACAGAATGCAGTGACTTCACTGGAGAAAGAACTCAATTTAAGGCAACAAGCGATGGAGTTACACAAACGAAAGGCTGTAGAAAGTGCACAGGCAGCCCAAGATGTAAAAATCCGGTTTGACTCGTTTCAACAACAATTTCAAGAGGCACAGGAAAGTCTGTCAGAGCAGACTCGAGCATCTGAAGAAGAAGCTTTTAAGTCTCGTAGAGTCCAGGAGGAATGTGCAAGTCTTAAGCGGAGACTCGAAAAAGAGAAGAAAAATGTCTTGTATGGTGCAGCGGATGAGATTCTGTTGGAGGAAATCAAACAATACAAGATGCTTCGACAGCTTGTAACAAATGGGGCAAACTCAATATGGGAGCATTCACTTCTGGACCCAAATCAAATGAAAAGTGGATTAAGGAAACCTAACCAAAAAGACCATGTACATCCGACAAAATCAACATTTATTAAAGCCAAGTACCAGAGGCTTGCATTTGTTCCTCGTCTTCCCTGTAAAGATGATGACACTATCACTGTTTCTGATCTCAGTCAGCAACTTCACTCAAGTGTACGAACTGGAAATCTAGAGACATGTTTGAGGCTTCTCTCTCTAGGTGCTCGGGCAAATTACTTTCATCCAGATAGAAGTAACACCCCACTTCATGTTGCCGCCAATGCTGGGCAAGCTCTTCAAGTGGAACTCCTTATTGTACATGGCGCTGATCCCAGTAAACCAGATATTAATGGCAAAACTCCAGTGGACTATGCTTTGGAGGCTGGTTTTCCCAACATTGCTCAACGACTCACTGAAGTTCAGTTTGAACTTACAGACAGACTCACATATTATTTATGTGGCAGAAGACCTGGTAATGAGCTGTTTATTTGTGCTTCAGATAATGTAGTGGTCAAACTGCTTACGCAGGGCCATCATTTATTAAGGGCCGTAACCCAGGCGTAG

Transcript

evm.model.contig_67091.1

ATGAAACGTTCTCAGTCAGATTCGTCGGGGGTACCCCCGGCGAAGAAGCAGGTTTTAACAAAGATGATCCCGCCGATGAACATTGGTTCTGTTTCAACAGAGGATGAAATGAACTTAAAGGTCTTGCAGTTTCAAAATAAGAAACTTGGAGAGAGACTGGAAGAACTAAAGATAGAAGAAGAGAAGTTAAAAGAACAAGTGGAAGAGCTCAAGAAACAGAGAGAATCTGATCTGGATATTATCTCTGTCATCAACAGACATTGGATGCAGCTTGATGAAGACATCAAGACCATATTACAAAGATATGAAGGTATTGTGGAGGAGGACTCAGAGCAGACATCTAATGAGGCTACTCTTTCATACTTGGACTACCTGGCCAATTTAGACTCAGAAGAAGTTCGACAAGAAGTAGCCAAGAGATCTGCGGCCACTAAAGAACACACAAGAAAGCTGTTACACTATGTAGAAATCTCTGGGCCATACTTATCCAAAGTGTCAAAAGAGAAGCCAAGTGATGATAATCAAGCAGAGGAAGAAGGACATAAAGATCAGCAAGGCCAAAAAGAAACAGTTCCAGAGGCAAGTTCTACGGAACAACCAAAACTCAACTTGGATACAGACAACAAACAGCTAAGGGAGTTGGTTACCTCGCTTCATCAAAAACAGCAGACTACATCACTTGAGttttcagaAATTCGCGATAAGTATGCCTTGGCTCAAAAAGAGATTGCACAGCTTAACACTGAACTTCAAGATGCCAAATACGAACTTCAAAAAGCCGACCACAGGGTGGACAACTTGGTGAAGAGGCTTAATGAACTGGAAGATGTGAATAAGAGACTGCGTGAAGGAAATACAGCTCTAGGTGAACCAGGGGAAAGTGGACCAGCACAGATAAACCAAATGCCAGAAAGTGCTGTTCTTCAGTCAGCCCCATACAAATGTTTGCAATCACAGTTTTCAGTTCTGTATGGAGAGGTCACCCAGCTTCGGCAGCAACTTGATGACACCCGCCGTGTTCTCAGCACCACTAAAACACAGCATGTCCTACAACTGGAACAAGTTGAGTCAAACAATGTGACAATACAAAAGAAATACAAGGCTGAAGTCAGTGAACTCCACGATGCATTACTGCAAGTAAAGAGAGACTATGACCTGCTAAGAATGGAGTTTGAACAAAACCTCAAAGCAAATGAACAGACAGGTCCAATGACAAAAGAGATGAGCCACATGCTGAATAGTTTACAGAGTCACAACCAGCAACTGAAGGTTGAAGTGTCGAGATACAAAAGGAAATTCAGCGAGTCCCAAGTTCAAGTCGTCAAGCTAACTGAAGAACTTAAGAATACCAAGGAGTCAGGCAAGAAGGCAGAATCAGTTGAGGAAGACAACCAGGTGGAAGGTCAACAGGAACCAGGTAAAGATGAACCAGAATCCAAAGCTTCAAAAtcagaagaagaaggagagaTAGAAGAAGCTGAAGACATAGCGTCAAGCAGTAAATCCCGTGACATGGAGCTCAAGGAACTGCGGGCAAGCTTGAAAAAAtcccaggaaactcagaaagaGATGAAGCTTGTGTTGGATGTTTACAAAGGGGCAGCGAAAGATCTCAGAGATAAAGTTGAGCTTCTGTCGGAGGAGAAACGTCTTAAAGAGCAGATAGAGGAGCAAAGAGCTCGAATAGAAAGCCTTGAGAAAGAATTGGAGAAACACAAAGGTGCTCTGGCTGATGAGGAGGCGATACGAAGGCTCAAAATGGCTGAGGAAACAATCGAACAACTACAGAAGAATCTAGCTGCAACGAAACAGGAGGAAGATGCTGTACTAGCGGAAATGGAGTTCACTGGACAAGCTTTTGAGGAGATGCAAGAACAGAACGTTCGACTATTACAACAGCTGAGAGAAAAAGATGATGCTAACCTGAAGCTTATGTCTGAGCGCATCAAAGGAAATCAGATTCAAAAACAGATCCGAGAGGAGATGGACGTGCTGGCGGATCAAGTGACCTCCCTGAACACCCACCGTGAAACACAGACTCAGTTGGTGAAGAAACTTGAGGAGAGAGAAAAGGCGTTACAGAATGCAGTGACTTCACTGGAGAAAGAACTCAATTTAAGGCAACAAGCGATGGAGTTACACAAACGAAAGGCTGTAGAAAGTGCACAGGCAGCCCAAGATGTAAAAATCCGGTTTGACTCGTTTCAACAACAATTTCAAGAGGCACAGGAAAGTCTGTCAGAGCAGACTCGAGCATCTGAAGAAGAAGCTTTTAAGTCTCGTAGAGTCCAGGAGGAATGTGCAAGTCTTAAGCGGAGACTcgaaaaagagaagaaaaatgtcTTGTATGGTGCAGCGGATGAGATTCTGTTGGAGGAAATCAAACAATACAAGATGCTTCGACAGCTTGTAACAAATGGGGCAAACTCAATATGGGAGCATTCACTTCTGGACCCAAATCAAATGAAAAGTGGATTAAGGAAACCTAACCAAAAAGACCATGTACATCCGACAAAATCAACATTTATTAAAGCCAAGTACCAGAGGCTTGCATTTGTTCCTCGTCTTCCCTGTAAAGATGATGACACTATCACTGTTTCTGATCTCAGTCAGcaaCTTCACTCAAGTGTACGAACTGGAAATCTAGAGACATGTTTGAGGCTTCTCTCTCTAGGTGCTCGGGCAAATTACTTTCATCCAGATAGAAGTAACACCCCACTTCATGTTGCCGCCAATGCTGGGCAAGCTCTTCAAGTGGAACTCCTTATTGTACATGGCGCTGATCCCAGTAAACCAGATATTAATGGCAAAACTCCAGTGGACTATGCTTTGGAGGCTGGTTTTCCCAACATTGCTCAACGACTCACTGAAGTTCAGTTTGAACTTACAGACAGACTCACATATTATTTATGTGGCAGAAGACCTGGTAATGAGCTGTTTATTTGTGCTTCAGATAATGTAGTGGTCAAACTGCTTACGCAGGGCCATCATTTATTAAGGGCCGTAACCCAGGCGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF08647 all species →	BRE1	BRE1 E3 ubiquitin ligase	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR013956 all species →	Family	E3 ubiquitin ligase Bre1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23163 all species →	RING FINGER PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0033503 all species →	Cellular Component	HULC complex	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071894 all species →	Biological Process	obsolete histone H2B conserved C-terminal lysine ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_67091.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.