Gene detail

Detailed information of evm.model.contig_67645.1 in Platygyra sinensis

Genomic Location: contig_67645:134...13637
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_67645.1

ATGCAGCTTAAGAAACTTGAACAGGAAGCTAAATACAAAAGGGAGAAACATGAAAGAGAGAAGGCCAGAGAAGAAGCGGCAAAAGAAAAAGCCAGAGAGAGGGAAATGCGTATTGCTGCTCGTAACGAAGCCCTGCAGACAGCAACAGAACAGCTGCAACTTAAAATCCAACAGAAGCAAGCCGAAACGACAAGACGACATGAGCAAGTGTTGGAACATGTGAAGGAAAAGGCTGCTGGTGTGTCACGCCATTCAACCCAAGACGAGGTCCCGGCTGTCACGCCATACGACAAGAAAAAGATGTGCTCGTTGTGTAACGTTGAGATTGTGTCAGAAGTTTACTTGTTGAGTCATTTGCGAGGAAAGAAACATCAACAAGCATTGTCTGAAATACCAGAGGCGAAAGGAACTGTGGAAGACAAGGATACGATTTCACTTCAGTACATCAAGGAAATGCCATCAGACAAGGCAGACCAGACAGAAAAGGCAGATCAAGAACGGCAGAAAGCTCTCAGAAAAAGAGCCAAGAAACTAAGAACTAGAATGGCAGCCAAAGGAAGAGAGTACGAAAGTAATTTGTCCAATTTATCATCAAAAAGACAAGAATCTGCAAAAAAGCCCAGACTTCAGAAAATTATCAAAGATCTTAATCGCCAGCTGCAGTCACAAGGAACTGGGCCCTGGCCAGCGAATCGTGTTGGATCACTTGAAAGATCTTTGGGTGAATTAAGCAGAATTTTGGAATCCAAGGTAACTGCTGACCAGGTGACATTTTGTAATCTCGGAGGATTGACAGCCCTAACAAGGGTCCTGTTAGTACCTGACATTGCCAGTGACAAGCCCCCGGTAAAACCAATTATTCCAAACAAAGCTCTCTGTAGCGTCGCTAATGTACTAGCGCTTGCTTGTGGTGATTGTCTGGACAACTGTCGTTACATGATCTGTACAAACAAACTCAGCTCAGTTGTGGATCTTCTTGTTTACCAGATAAAGGGTGTCCCTCAGTCCCATGGCACGGCAAAGAAAGGAGCGGAAAAGGAGAGTGGGAGTGTTGCTGCAAACCAGTCGTTACCAGACCCCTTGGCAACAGCGCTGTTGAAGGTGCTAGCCACAGTACTTCAGTGCTTTGCGACAGCTTCGCCGGAAGAGAAGGAAGCAGCGACTCTTGTGCAAAGAATGGTGGATTTGATCGGTTATGTGGTGTGTTCTGGAGTGGTCGATGACATCAGAAGTTTCTTCAGTACAATTCATGGACCCTTAAATGAAGATCTACCAGCAGTGAACTACGCTCAAGCCTGTTTGGCTCTTTTATCAGCAACTGCTCAATACCTTGGTTCACGGTTAAGTAATATTTTTGAAACGAGGAAAGAAGACCTTACTCAATTTGTCGTGACATTTCAACAGACCGAACTTGTAGAAATCGTATCGTTTCTGTATGCCATCCTAATGAATGCTGGAAATGCGCAGTCCTCGTCGAGTTCAACGCTTCCAGAGGCAACGATAAACTTGGTGACAGAGGCGCTGTGTATGTTGAACTTCATGGGAACTGTTGATCTAAAGGTGTTACAAGCTTGTTTGGGAGCAGAAGGTGTTTCTCTGGAATTTCGGCACATTATCAGTCATCTTTTGTGTGTTTGTAGTGAAGGAAAGAATGAAGATCTGCTGCATGAAGTAATATTAATCGTTGGATATTTCACCGTTTTGAACAATGATAACCAGGTGTTTGTTCAGACTGGGAGACCTCCTACCTTACTGCAACATCTGTGTTCTCTTCCTTTCCAGTATTTCAGTGATCCCAGACTTCGTAATGTCTTATTTCCAACACTCATTGTTGCGTGTTTTGAAAACGAAGAAAACAAGAAGATAATTGAACAAGAAGTGAGCTGCGCCTTGCTTGAAAACTATATCGAGGAACAAATATTAGATCTTCATCATGATCACTTGTTACCCTCTCAGAGCGGAAGACGGTCAGATGGCGAGGTGTCCCAGCGTTTTGCTCTGGTAAACAGGTTTCCATCTTCAAAGTGGGAAGATGCAAGGAGTTTTCTGTTAGGATCCTGA

Transcript

evm.model.contig_67645.1

ATGCAGCTTAAGAAACTTGAACAGGAAGCTAAATACAAAAGGGAGAAACATGAAAGAGAGAAGGCCAGAGAAGAAGCGGCAAAAGAAAAAGCCAGagAGAGGGAAATGCGTATTGCTGCTCGTAACGAAGCCCTGCAGACAGCAACAGAACAGCTGCAACTTAAAATCCAACAGAAGCAAGCCGAAACGACAAGACGACATGAGCAAGTGTTGGAACATGTGAAGGAAAAGGCTGCTGgtgtgtcacgccattcaaccCAAGACGAGGTCCCGGCTGTCACGCCATACGACAAGAAAAAGATGTGCTCGTTGTGTAACGTTGAGATTGTGTCAGAAGTTTACTTGTTGAGTCATTTGCGAGGAAAGAAACATCAACAAGCATTGTCTGAAATACCAGAGGCGAAAGGAACTGTGGAAGACAAGGATACGATTTCACTTCAGTACATCAAGGAAATGCCATCAGACAAGGCAGACCAGACAGAAAAGGCAGATCAAGAACGGCAGAAAGCTCTCAGAAAAAGAGCCAAGAAACTAAGAACTAGAATGGCAGCCAAAGGAAGAGAGTACGAAAGTAATTTGTCCAATTTATCATCAAAAAGACAAGAATCTGCAAAAAAGCCCAGACTTCAGAAAATTATCAAAGATCTTAATCGCCAGCTGCAGTCACAAGGAACTGGGCCCTGGCCAGCGAATCGTGTTGGATCACTTGAAAGATCTTTGGGTGAATTAAGCAGAATTTTGGAATCCAAGGTAACTGCTGACCAGGTGACATTTTGTAATCTCGGAGGATTGACAGCCCTAACAAGGGTCCTGTTAGTACCTGACATTGCCAGTGACAAGCCCCCGGTAAAACCAATTATTCCAAACAAAGCTCTCTGTAGCGTCGCTAATGTACTAGCGCTTGCTTGTGGTGATTGTCTGGACAACTGTCGTTACATGATCTGTACAAACAAACTCAGCTCAGTTGTGGATCTTCTTGTTTACCAGATAAAGGGTGTCCCTCAGTCCCATGGCACGGCAAAGAAAGGAGCGGAAAAGGAGAGTGGGAGTGTTGCTGCAAACCAGTCGTTACCAGACCCCTTGGCAACAGCGCTGTTGAAGGTGCTAGCCACAGTACTTCAGTGCTTTGCGACAGCTTCGCCGGAAGAGAAGGAAGCAGCGACTCTTGTGCAAAGAATGGTGGATTTGATCGGTTATGTGGTGTGTTCTGGAGTGGTCGATGACATCAGAAGTTTCTTCAGTACAATTCATGGACCCTTAAATGAAGATCTACCAGCAGTGAACTACGCTCAAGCCTGTTTGGCTCTTTTATCAGCAACTGCTCAATACCTTGGTTCACGGTTAAGTAATATTTTTGAAACGAGGAAAGAAGACCTTACTCAATTTGTCGTGACATTTCAACAGACCGAACTTGTAGAAATCGTATCGTTTCTGTATGCCATCCTAATGAATGCTGGAAATGCGCAGTCCTCGTCGAGTTCAACGCTTCCAGAGGCAACGATAAACTTGGTGACAGAGGCGCTGTGTATGTTGAACTTCATGGGAACTGTTGATCTAAAGGTGTTACAAGCTTGTTTGGGAGCAGAAGGTGTTTCTCTGGAATTTCGGCACATTATCAGTCATCTTTTGTGtgtTTGTAGTGAAGGAAAGAATGAAGATCTGCTGCATGAAGTAATATTAATCGTTGGATATTTCACCGTTTTGAACAATGATAACCAGGTGTTTGTTCAGACTGGGAGACCTCCTACCTTACTGCAACATCTGTGTTCTCTTCCTTTCCAGTATTTCAGTGATCCCAGACTTCGTAATGTCTTATTTCCAACACTCATTGTTGCGTGTTTtgaaaacgaagaaaacaagAAGATAATTGAACAAGAAGTGAGCTGCGCCTTGCTTGAAAACTATATCGAGGAACAAATATTAGATCTTCATCATGATCACTTGTTACCCTCTCAGAGCGGAAGACGGTCAGATGGCGAGGTGTCCCAGCGTTTTGCTCTGGTAAACAGGTTTCCATCTTCAAAGTGGGAAGATGCAAGGAGTTTTCTGTTAGGATCCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31434 all species →	S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_67645.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.