Detailed information of evm.model.contig_67927.1 in Platygyra sinensis

Genomic Location: contig_67927:3967...23539
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20644
all species →		Rrn7_cyclin_NRrn7/TAF1B, N-terminal cyclin domainDomainInterproscan
PF20645
all species →		Rrn7_cyclin_CRrn7/TAF1B, C-terminal cyclin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033599
all species →		FamilyRNA polymerase I transcription initiation factor TAF1B/Rrn7Interproscan
IPR048540
all species →		DomainRrn7/TAF1B, N-terminal cyclin domainInterproscan
IPR048538
all species →		DomainRrn7/TAF1B, C-terminal cyclin domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31576
all species →		TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001164
all species →		Molecular FunctionRNA polymerase I core promoter sequence-specific DNA bindingInterproscan
GO:0001188
all species →		Biological ProcessRNA polymerase I preinitiation complex assemblyInterproscan
GO:0005668
all species →		Cellular ComponentRNA polymerase transcription factor SL1 complexInterproscan
GO:0006360
all species →		Biological Processtranscription by RNA polymerase IInterproscan
GO:0042790
all species →		Biological Processnucleolar large rRNA transcription by RNA polymerase IInterproscan
GO:0070860
all species →		Cellular ComponentRNA polymerase I core factor complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.contig_67927.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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