Gene detail

Detailed information of evm.model.contig_68041.6 in Platygyra sinensis

Genomic Location: contig_68041:32150...55381
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_68041.6

ATGAAGCTGCTGACCAAGCAGGGAATCATAAAGTCACAGACAGAATGTGCACCTAACAATGGCTACTTTCTTATTCCATTGTATGACAAGGGAACGTTTGTACTAAAGATTGAGCCACCTGTTGGTTGGAGTTTTGATCCAAATAGTGTGGAGTTAAACATAGATGGTACTACAGACAAGTGCAGTAAAGGAGAAGACATTAATTTCATATTCACAGGTTTCACACTCTCTGGAAAGGCTGAGATAGAAGTTTTGGTTGAGTCCAGTAATGTTGACGTTATGGACAAGATGATCGTGTCTGGGTATGATGTTAAAGGTCATGTGCTAAGTGATGGTGAACCTATTCAAGATGTGGGATTTCTTCTGTTCTCCAAGTCTGTTAGTCAGAAGAACTTACCAGGGTGTGAAGAGATTCCTGCTGATGTGATAGAAAACATTAAAAAGAAAACTGAAGTTGATACGCCATTGTGTCGTGTAAAGTCAGGTGTTGATGGGCTGTTTGTGTTTCCAAGTGTCCCAAGTGGCGAATACACACTGGTTCCATATTACCAAGGAGAGCTGATTACTTTTGATGTGGTTCCCTCTAAACTAACCTTTACTGTCAATTACAAAAGTGTTGTGTTGAAGACTCCATTTCAAGTGCATGGATTTTCGGTCACAGGCCAAATTCTTACAGGAGAGGGTCAAGGCATTGGAGACGTTACAATTTCAGCTGGTGAAGGTCTGACAGCAACAACAACTGCAGAGGGTGTCTATGTTTTGAACAATGTTACAGCTGGGAGCTACACTATTCAGGCAAATAAAGAACATTACTTTTTTAATCCAGTGAAAGTTCAAGTTACTCCAAACACTCCCAGGCTTCCAGTGATCACTCCCACATCATACCACCTGTGTGGAAATTTAAAGTTTGATGAGTTTCCTCCTGGAGTTAGTCTGTTAAAAGGACGGAAAATGATTTTACAAACAGAAGGTGCATCAATTGCAACAAGATCAATGTCTACCTCAGTGGATGGAAATGGTGACTTTTGCTTCAAAGTTCCACCAGGGGTTCATACCATTCAGCCTGTGATAACAATGCAAGAGGTTTCTGCTGGCTTGGCATTAACACCCAAGGAACAAGTAGTGACCGTGACAAACAGTCCTGTTCTCGGCATAACATTCTCGCAGTTCAGGGCAACTGTTGCTGGAACTGTAAAATGTATTGGTGGTTCCTGTACTGGGGTATCAGTGTCACTTCAATCAATGTCAAACCCTAATCTGCCCAAAGTAGAGGCGCAGGTCACTGATGCTTCTTTCAACTTTAAAGATGTTTTTCCTGGAAAATATAAAGCCTCTGTACTTGAAGAATCTTGGTGCTGGGAAAATTCATCTTTGGAGGTTGAAGTGGCAGAAGCAGATGTCACTGACCTACAGTTTGTTCAGTCAGGATTTATTTTGAAATGTATCCTGTCCCATGACATCACATTGTTCTTTTCACTGGAATCTGGTAAAGAAACTGTGGACTCTTTTGACTTGCCAAAAGGAACTAAAACATTTTGTTTGAAGGAGCCAGGAGTTTACAATCTTATGCCTCGCTCATGCCATCAGTTTGAACAAGACGTGTTTAAATACAATACCTCTGCCCCGTCTGTGCTTACATTAACCGCTATCAAGCATTTGCTCTCTGGAACAATCAAAACCCTGGAACACACAAGCGATATCACAGTACAAATCAGGTCCCTGAAATCTAAAGAGGTCACAACCATCGGACCGTTACAACTGGAATCAAAAGAAAAGAAAGATGATGGTGATTTAAATAGCAGTAAGCCTGAAGAGCAGAAACACGAGCTTTTATACAACTTTTCACACTGGGGAAGGCGTGGTGAGGAATTTGAAGTCACCCCAGCTTCATCAGAGCTGCTGTTTTACCCTGCAAGCAGAGTTGTTACCATCTCAGATGACTGTCCAGCAGCGTGGGCGGAATTTGAAGGAAGAAAAGGTGTCTTCATTGAGGGACAAGTTGCCCCTCCCCTGAGTGGTGTGCAGATTGTCATTTCGTCAGGCGGTGAGAAGCCCATAGCTGACATCACAGTCGAAACAGACAGCAATGGAAAATACAGGGTGGGTCCTCTTCATGGAGGCATTGAATACTTCTTGGCTGCAAGCAAACAAGGTTTTATACTCAGCCCTGTGCCAGACAAGAAAGGAGATTTTCAAGCGCTGAAACTTGGACAAATTGAAATTGTGGTATCTGATGACAATGATCAACCGTTATCTGCAGTTCTGTTGTCGCTGAGCGCGGGTCAGTTCCGTAGCAATAACCTGACTCTTGATAATGGCACGATGGTGTTTGCTAACTTGCGTCCAGGACAGTACTTTTTCCGTCCGATGTTAAAAGAGTACACCTTTTCACCTGTTTCTCAGATGATAGATGTTGAGGAGGGTGCCACTGTTACAATGCATGTCAAAGGAAAAAGAGTGGCCTTCAGTTGTTTCGGTCAAATATCATCCCTTAATGGAGAGCCAGAAAAAGGAATAGCCATTGAGGCTGTCGGCCTCGATAGCTGCGAATCTTTTCAAGAAGAAACAGTTTCTGATCAAGACGGTCAATATCGCTTGCGTGGACTTCAGCCCGGGTGCATGTATAGAGTTCGAGTGAAGACTGGAGATAGTAATCCGCACATTGAGCGAGCCTCGCCATCGTTCATCGACATACAGGTTTCTGGCTCTGACCTTCAGAATGTAAACATGATCGCTTTCCGCCATGTCAATCAATTTGAAATTACCGGCAATGTTGTGACTGACAGCCAGTTCATTTCATCTCTTAAGGTCACGCTGTCCCCAGAAAACAATCCAGATACCCCAGTGTTTACCACGCCCGTCAGCGTTGCCAGCTACTTCCAGTTTCCCTCCGTGCCTAATGACGGACTTGTTTACATTGTTCGTTTGGACTCTTCTCTCTCCACCTTAAATTATAATTTCGTACGACCTGAATCTACTGTCACTGCCACTGGAGTGCGGGCTCATGTCACGTTTAAATTTGAACCACAGCCACGTAAAGCTGAACCAGAACCTACTCAAGGCTCGTTTCTCACCTTACCTCTGTTGGTTCTTCTAATTCTTTTAGCTGTGAACCACAACAAGGTTATTCCATTTCTTCAACAAGTTCCTCAACTCGTACAAGGTGTGTCTGCTGACCAACTGCAGCCTCAGATGGAGGATCCTTTCAAGAACAAAAAGAAACTCAAGGAAATACGTCGAAGATAA

Transcript

evm.model.contig_68041.6

ATGAAGCTGCTGACCAAGCAGGGAATCATAAAGTCACAGACAGAATGTGCACCTAACAATGGCTACTTTCTTATTCCATTGTATGACAAGggaaCGTTTGTACTAAAGATTGAGCCACCTGTTGGTTGGAGTTTTGATCCAAATAGTGTGGAGTTAAACATAGATGGTACTACAGACAAGTGCAGTAAAGGAGAAGACATTAATTTCATATTCACAGGTTTCACACTCTCTGGAAAGGCTGAGATAGAAGTTTTGGTTGAGTCCAGTAATGTTGACGTTATGGACAAGATGATCGTGTCTGGGTATGATGTTAAAGGTCATGTGCTAAGTGATGGTGAACCTATTCAAGATGTGGGATTTCTTCTGTTCTCCAAGTCTGTTAGTCAGAAGAACTTACCAGGGTGTGAAGAGATTCCTGCTGATGTGAtagaaaacattaaaaagaaaactgaagttGATACGCCATTGTGTCGTGTAAAGTCAGGTGTTGATGGGCTGTTTGTGTTTCCAAGTGTCCCAAGTGGCGAATACACACTGGTTCCATATTACCAAGGAGAGCTGATTACTTTTGATGTGGTTCCCTCTAAACTAACCTTTACTGTCAATTACAAAAGTGTTGTGTTGAAGACTCCATTTCAAGTGCATGGATTTTCGGTCACAGGCCAAATTCTTACAGGAGAGGGTCAAGGCATTGGAGACGTTACAATTTCAGCTGGTGAAGGTCTGACAGCAACAACAACTGCAGAGGGTGTCTATGTTTTGAACAATGTTACAGCTGGGAGCTACACTATTCAGGCAAATAAAGAACATTACTTTTTTAATCCAGTGAAAGTTCAAGTTACTCCAAACACTCCCAGGCTTCCAGTGATCACTCCCACATCATACCACCTGTGTGGAAATTTAAAGTTTGATGAGTTTCCTCCTGGAGTTAGTCTGttaaaaggaCGGAAAATGATTTTACAAACAGAAGGTGCATCAATTGCAACAAGATCAATGTCTACCTCAGTGGATGGAAATGGTGACTTTTGCTTCAAAGTTCCACCAGGGGTTCATACCATTCAGCCTGTGATAACAATGCAAGAGGTTTCTGCTGGCTTGGCATTAACACCCAAGGAACAAGTAGTGACCGTGACAAACAGTCCTGTTCTCGGCATAACATTCTCGCAGTTCAGGGCAACTGTTGCTGGAACTGTAAAATGTATTGGTGGTTCCTGTACTGGGGTATCAGTGTCACTTCAATCAATGTCAAACCCTAATCTGCCCAAAGTAGAGGCGCAGGTCACTGATGCTTCTTTCAActttaaagatgtttttcctggaaaatatAAAGCCTCTGTACTTGAAGAATCTTGGTGCTGGGAAAATTCATCTTTGGAGGTTGAAGTGGCAGAAGCAGATGTCACTGACCTACAGTTTGTTCAGTCAGGATTTATTTTGAAATGTATCCTGTCCCATGACATCACATTGttCTTTTCACTGGAATCTGGTAAAGAAACTGTGGACTCTTTTGACTTGCCAAAAGGAactaaaacattttgtttgaaggAGCCAGGAGTTTACAATCTTATGCCTCGCTCATGCCATCAGTTTGAACAAGACGTGTTTAAATACAATACCTCTGCCCCGTCTGTGCTTACATTAACCGCTATCAAGCATTTGCTCTCTGGAACAATCAAAACCCTGGAACACACAAGCGATATCACAGTACAAATCAGGTCCCTGAAATCTAAAGAGGTCACAACCATCGGACCGTTACAACTGgaatcaaaagaaaagaaagatgatGGTGATTTAAATAGCAGTAAGCCTGAAGAGCAGAAACACGAGCTTTTATACAACTTTTCACACTGGGGaagGCGTGGTGAGGAATTTGAAGTCACCCCAGCTTCATCAGAGCTGCTGTTttaccctgcaagcagagttGTTACCATCTCAGATGACTGTCCAGCAGCGTGGGCGGAATTTGAAGGAAGAAAAGGTGTCTTCATTGAGGGACAAGTTGCCCCTCCCCTGAGTGGTGTGCAGATTGTCATTTCGTCAGGCGGTGAGAAGCCCATAGCTGACATCACAGTCGAAACAGACAGCAATGGAAAATACAGGGTGGGTCCTCTTCATGGAGGCATTGAATACTTCTTGGCTGCAAGCAAACAAGGTTTTATACTCAGCCCTGTGCCAGACAAGAAAGGAGATTTTCAAGCGCTGAAACTtggacaaattgaaattgtGGTATCTGATGACAATGATCAACCGTTATCTGCAGTTCTGTTGTCGCTGAGCGCGGGTCAGTTCCGTAGCAATAACCTGACTCTTGATAATGGCACGATGGTGTTTGCTAACTTGCGTCCAGGACAGTACTTTTTCCGTCCGATGTTAAAAGAGTACACCTTTTCACCTGTTTCTCAGATGATAGATGTTGAGGAGGGTGCCACTGTTACAATGCATGTCAAAGGAAAAAGAGTGGCCTTCAGTTGTTTCGGTCAAATATCATCCCTTAATGGAGAGCCAGAAAAAGGAATAGCCATTGAGGCTGTCGGCCTCGATAGCTGCGAATCTTTTCAAGAAGAAACAGTTTCTGATCAAGACGGTCAATATCGCTTGCGTGGACTTCAGccCGGGTGCATGTATAGAGTTCGAGTGAAGACTGGAGATAGTAATCCGCACATTGAGCGAGCCTCGCCATCGTTCATCGACATACAGGTTTCTGGCTCTGACCTTCAGAATGTAAACATGATCGCTTTCCGCCATGTcaatcaatttgaaattaccGGCAATGTTGTGACTGACAGCCAGTTCATTTCATCTCTTAAGgtCACGCTGTCCCCAGAAAACAATCCAGATACCCCAGTGTTTACCACGCCCGTCAGCGTTGCCAGCTACTTCCAGTTTCCCTCCGTGCCTAATGACGGACTTGTTTACATTGTTCGTTTGGACTCTTCTCTCTCCACCTTAAATTATAATTTCGTACGACCTGAATCTACTGTCACTGCCACTGGAGTGCGGGCTCATGTCACGTTTAAATTTGAACCACAGCCACGTAAAGCTGAACCAGAACCTACTCAAGGCTCGTTTCTCACCTTACCTCTGTTGGTTCTTCTAATTCTTTTAGCTGTGAACCACAACAAGGTTATTCCATTTCTTCAACAAGTTCCTCAACTCGTACAAGGTGTGTCTGCTGACCAACTGCAGCCTCAGATGGAGGATCCTTTcaagaacaaaaagaaactcaAGGAAATACGTCGAAGATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09430 all species →	EMC7_beta-sandw	ER membrane protein complex subunit 7, beta-sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013784 all species →	Homologous_superfamily	Carbohydrate-binding-like fold	Interproscan
IPR051417 all species →	Family	Serine-Aspartate Repeat-Containing	Interproscan
IPR019008 all species →	Domain	ER membrane protein complex subunit 7, beta-sandwich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23303 all species →	CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26500	NOMO1_2_3; BOS complex subunit NOMO	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.