Gene detail

Detailed information of evm.model.contig_68521.2 in Platygyra sinensis

Genomic Location: contig_68521:13512...25423
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18891 all species →	FANCL_d3	FANCL UBC-like domain 3	Domain	Interproscan
PF18890 all species →	FANCL_d2	FANCL UBC-like domain 2	Domain	Interproscan
PF11793 all species →	FANCL_C	FANCL C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044037 all species →	Domain	FANCL, UBC-like domain 3	Interproscan
IPR026848 all species →	Family	E3 ubiquitin-protein ligase FANCL	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR043898 all species →	Domain	FANCL, UBC-like domain 2	Interproscan
IPR043003 all species →	Homologous_superfamily	FANCL, UBC-like domain 3 superfamily	Interproscan
IPR026850 all species →	Domain	FANCL C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13206 all species →	UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0036297 all species →	Biological Process	interstrand cross-link repair	Interproscan
GO:0043240 all species →	Cellular Component	Fanconi anaemia nuclear complex	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10606	FANCL, PHF9; E3 ubiquitin-protein ligase FANCL	EC:2.3.2.27	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.