Gene detail

Detailed information of evm.model.contig_6854.3 in Platygyra sinensis

Genomic Location: contig_6854:36547...55033
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_6854.3

ATGACACCCACCTCTTTACTAGACGGAGGCTCACCAGGAGAAACTGGGCACCAAGGTGGCGGGAACCAGGGTGGCGGGCACCAAGGTGGTGGGCAGCAAGGTGGCGGGCAGCAAGGTGGTGGACAGCAAGGTGGCGGGCAGCGAGGTGGTGGACATCAAGGTGGTGGGCATCAAGGCGGTGGTCAGCAAGGTGGTGGTCAGCAAGGTGGTGGTCAACAAGGTGGCGGGCAGCAAGGTGGTGGACAGCAAGGTGGCGGGCAGCAAGGTGGCGGGCAGCAAGGCGATGGACAACAAGGTGGTGTGCATCAAGGTGGTGGCCATCAAGGTGGTGGTCAGCAAGGTGGCGGGCACCAAGGCAGTGGGCAGCAAGGTGGTGGGCACCAAGGTAGTGGGCATCAAGGTGGTGGGCACCAAGGCGGTGGGCATCAAGGTGGCGGGCAGCAAGGTGGCGGGCACCAAGGCGGTGGGCAGCAAGGTGGTGGGCAGCAAGGTGGTGGGCATCAAGGTGGTGGGCATCAAGGTGGTGGGCACCAAGGCGGTGGGCATCAAGGTGGCGTGCAGCAAGGTGGCGGGCACCACGGCGGTGAGCAACAAGGTGGTGGGCACCAAGGCGGTGGGCATCAAGGTGGTGGGCATCAAGGTGGTGGGCACCAAGGCGGTGGGCATCAAGGTGGTTGGCATCCAGGTGGTTGGCATCCAGGTGGTGGGCACCAAGGTGGTTGGCATCAAGGTGGTGGGCATCAAGGCGGTGGGCATCAAGGTGGTTGGCATCAAGGTGGTGGGCATCAAGGCGGTGGGCATCAAGGTGGTTGGCAGCAAGGTGGTGGACACCAAGGGCATCAAGGTAGCCTTGCAGCAGGCTTATCGGGAATGACCCTGGATAGGGAGTCCGTAGTTCCCAGGTGTCTGCTGGAAGAGGTCTCCTCCTTTCTAACTGAAAACGGAGCTCCCGAATCAAGCAACGTTACTTCGCATATTCCACGCTGCCGACTGGACCACAGTTTCGATTGTCATCAACAGTGGCCAGCACTGGGTTTGTCATGGCGGGCAGACAGTCAAGGCCGCATGATGGCGAACACGCTGACCAAAGGCAAACCGAATTGCCCATTGAAAAAAGTTTCTAGGAAAGCTCTTGTATGCGTCCATGGGGAAAAGATAATCCATTGTAAGCGAGGAACCACTCTTTCTTTTTTGGACATCAAGTTGAGTCGCAGCGCAGCTCCTGGGCACTTGTGTCATCATCGTGGAAGAAACGAAGAAAACAGCACATTACCCAGTGATCATCGCTGCAATGCAACCAAAGTGATTGGAAAAATCCGCAAACGTTGCCAAGGGAGACGGGAGTGCTGGATCAACCTCAATGAGCGATACCTCGGGACCGCATGCGTTATGGAAGTGAAATTCCTTTGGGTTAATTTCACGTGTGATCAGAGAGATAACAACGTGACTGAAGAATCAGAAATAGAAGATGCAATGTACAGTCGATGGGATGACATGGATGATATCTGCACTGACGACGACACTGAAGACACTAACGACGACGTAGACTTCGATGATGATGACGATATCATCCGCAGCAGTGGTGACAGTGGCATTGACCCTGATAGAGATGATTATGACGATAGTCTTGGTGATTACAATGATGATGACGACGACGATGACAACTACTTTCTAGATGACAATCATGATGTTGGAGACACTTTTGAGGACGGTGTCGTTCACTTCCGGTCCATGAATATCCTGGGCTCCAGCAACTTGTTGATTGGAATGGGCCGTGGAGAGGAGCGTGAACGACAATATTGCCTGCGCCTAAACTGGCTAAAAGAACCTGACTTGTACAAGGAATATGATTTTAACCCACCTTCAGTTTGTCCAAAGAATGAACCATTGCAGTCGAAATGCAGCCCGAACCTTTGCAAACTTGTCAAGTGTGGCGATCACAAAAACGTCACCTGTAGAGTCAATCCATGTGGGTACTGCAGACCTGAGTGTTATGACGCCAATGGAAACCGAGTACAAAGTCCACGTGCCTTAACAAAGTGTGAGAAAGAACGCCTGGAAATCAAATACCGCTACTCTGATGAAATAAGAGTTGTTCCGAGATGCAATGAAGACGGTAGCTTTGCTGAGATTCAATGTCTTCAAAAGGTGAACAAATGCTGGTGTGTTGATGAACATGGAAGGGAAAGAAATGGTACTAGGCAAACGGGAAAACCAAGAAATTGCAAAGCCTCGGGTCCAGTTCTGTCTTCATGTCAGTCATCCATACTAAACATCAAGAACCTTAAGAAGCACTTAAGGAAGATGGCGGCAAACTTCAACGAGACAGCAAAGACCTTGAAATCCAAAGCTGAAAACATGACCCAGAGGATACAACAACAACCCAATCAACAGCGAAACCGAAGCGGGCGTCACCACCAGCGATACATCAGACATCAAATGAACAGGGAAAGAATGTGCCGCTTGGTAGCAAAAAAGACAATGAAGTCGGTGAAGTACATCGCCGAGCCTAAATGCGGTGCGGACGGGAATTACGAAACCATCCAGTGTGAATCGTTAGGGAAGTGGTGTTGGTGCGTCAATGAAAACGGAAAGAGAGTAGGATCGATGAAACTGCTAAAAGAGCTGAACTGTTCCAGCACTGATGAAGGAAGAGGAAAACTTTGCCCTTCTGCGTCTAGCTTTGGATCAGGCGCGGGACAAAATATACAAAGCTCATGCAGAAACGACAGTGACTGCTCTGACTCTCAATTATGTTGCAAGACTAGCCAAAGAGAGCGAGGCTGTGTGGATCCGCCTCCAAAGATGCCAGAAATCAAACCGGGAAGGTGTCCTGACATACCCAATTCCATGAACTACTCCTGCCCGTCCAAATGCAGGACCGATGCAGACTGCCGAGGGGACATGAAGTGCTGTGGAATGGGATGCGTGTGCTCCAAAGGCAAGCCATTCAAACTTTGCATATACGACAAATGCCTCTCATCTCCCGGCTGTCCCAGCCATCCATCAGCCTGTTGTCGTATGAACTATTGTGGAGGATGCACTGCTGAATATTTCGATGAAAATGGTCGCAAAATTGACTGTGATAAAGCAACCCAATGTCAAAAGCAGAGACATGCGGCAACAGAAAATTATAAAAGAAAGTTTCTTCAAGTCTATGGTGCAATGCCAAATGGCGTTCCAGGATCTCATCAACAAAGGAATACAACTATGCAAGCTGGAAGGCATCGAGGTAACCAGGGAAGAAGGCAAGAAGACGACCACGGTAGGCGACATTGGAGTGGTAATGGAGGGGTTCATGGCGGAATGCTAGGTGGAGATGACAGAGGAGAACACGACAATCAACAAAGAGGAAATCGAGGGAGTCAAGGTGGGACACAAAGTGGAGTTCACAGTGCAATACAACATAGCAGTCAAAATAGTTCAGATGGAAGGCAACGTGGTGGAGGAGATAAGAGTGGCCAAGGCCAGGGCTCTGGAGGAGATCACAGTCGTAGTAGAGAGGAAGACGGTGGTACAAACAGTGGAGAGCAAAATGAACCAGCTGGTGGACGTGGTCGTCAAAATCAAGACCAAAGAAGGCAGCCAGATCTTGGAATATTCATTCCAGAGTGTAATCTGAAAGATGGAGCTTTCCTAGCGGAGCAGTGTAACTTTACCGCTGGTGAATGCTGGTGTGTGGATGAAAAGGGGCACGAAAAGCCCAACACGCGTGCGCGCGTGCAGCCAGGAACAAGAGACTGCAAGGCTGCATTAACAAAAAGCAGTGAGCAAAGCAAAGGTGTACGGCATGGACCAAAAACCAAAGGCAATCGGAAAACAAAGAGAGTTGGGAAAATAAGCATTAGACTGGAAGGGAATTTTGACGAAGTCCTTAAGAACAAGGATAAATTTATCAACAACTTTAAAGAGGCAGTGGTCCGCGGCACTAAGGTCAAGAAGGAGCAAATTCAGAATGTTGGAATCTCAAGGGGAAGCATCAAGGTGCAATTCGAGATTGTAGAAGAGGAAGACTCGGCTCCACTTGAAGAAATCGTGGAAAACCTCGAGACAGTGGTGAAATCCAAGGCCTTTGTGGTCAAGATGGATGACAAAGAGTATCGTTCTGACGGCACATTTCACGCTGGGGTACACAATCACCGTTCCGATGACACTGCCGATGCTGTTCATAAACGGCAGCTTTCATCAGTTGAGGCGATTGCCATTGGTTCTTGCGCGGCCGCTTGTTTATTGGGAACAGCGGTGTTCGTCTGGAAGTTTTATTGCCGTGGGAGAAAGAAATTAGAGCCTGAAGGCTGGAAGGACATGGTCGAAAAGAAACCTCCAGAGATACAGTTCTACACACCAGATGTTGTGCCGGCAGTGACCACCAACATGACCTCTTCTTGTAAGGTGCCTCAGTTTTCTAGGGGCAATGCTGTTGAAGCCATGCCGGAACCAAGCATTTAA

Transcript

evm.model.contig_6854.3

ATGACACCCACCTCTTTACTAGACGGAGGCTCACCAGGAGAAACTGGGCACCAAGGTGGCGGGAACCAGGGTGGCGGGCACCAAGGTGGTGGGCAGCAAGGTGGCGGGCAGCAAGGTGGTGGACAGCAAGGTGGCGGGCAGCGAGGTGGTGGACATCAAGGTGGTGGGCATCAAGGCGGTGGTCAGCAAGGTGGTGGTCAGCAAGGTGGTGGTCAACAAGGTGGCGGGCAGCAAGGTGGTGGACAGCAAGGTGGCGGGCAGCAAGGTGGCGGGCAGCAAGGCGATGGACAACAAGGTGGTGTGCATCAAGGTGGTGGCCATCAAGGTGGTGGTCAGCAAGGTGGCGGGCACCAAGGCAGTGGGCAGCAAGGTGGTGGGCACCAAGGTAGTGGGCATCAAGGTGGTGGGCACCAAGGCGGTGGGCATCAAGGTGGCGGGCAGCAAGGTGGCGGGCACCAAGGCGGTGGGCAGCAAGGTGGTGGGCAGCAAGGTGGTGGGCATCAAGGTGGTGGGCATCAAGGTGGTGGGCACCAAGGCGGTGGGCATCAAGGTGGCGTGCAGCAAGGTGGCGGGCACCACGGCGGTGAGCAACAAGGTGGTGGGCACCAAGGCGGTGGGCATCAAGGTGGTGGGCATCAAGGTGGTGGGCACCAAGGCGGTGGGCATCAAGGTGGTTGGCATCCAGGTGGTTGGCATCCAGGTGGTGGGCACCAAGGTGGTTGGCATCAAGGTGGTGGGCATCAAGGCGGTGGGCATCAAGGTGGTTGGCATCAAGGTGGTGGGCATCAAGGCGGTGGGCATCAAGGTGGTTGGCAGCAAGGTGGTGGACACCAAGGGCATCAAGGTAGCCTTGCAGCAGGCTTATCGGGAATGACCCTGGATAGGGAGTCCGTAGTTCCCAGGTGTCTGCTGGAAGAGGTCTCCTCCTTTCTAACTGAAAACGGAGCTCCCGAATCAAGCAACGTTACTTCGCATATTCCACGCTGCCGACTGGACCACAGTTTCGATTGTCATCAACAGTGGCCAGCACTGGGTTTGTCATGGCGGGCAGACAGTCAAGGCCGCATGATGGCGAACACGCTGACCAAAGGCAAACCGAATTGCCCATTGAAAAAAGTTTCTAGGAAAGCTCTTGTATGCGTCCATGGGGAAAAGATAATCCATTGTAAGCGAGGAACCACTCTTTCTTTTTTGGACATCAAGTTGAGTCGCAGCGCAGCTCCTGGGCACTTGTGTCATCATCGTGGAAGAAACGAAGAAAACAGCACATTACCCAGTGATCATCGCTGCAATGCAACCAAAGTGATTGGAAAAATCCGCAAACGTTGCCAAGGGAGACGGGAGTGCTGGATCAACCTCAATGAGCGATACCTCGGGACCGCATGCGTTATGGAAGTGAAATTCCTTTGGGTTAATTTCACGTGTGATCAGAGAGATAACAACGTGACTGAAGAATCAGAAATAGAAGATGCAATGTACAGTCGATGGGATGACATGGATGATATCTGCACTGACGACGACACTGAAGACACTAACGACGACGTAGACttcgatgatgatgacgatatcATCCGCAGCAGTGGTGACAGTGGCATTGACCCTGATAGAGATGATTATGACGATAGTCTTGGTGATtacaatgatgatgacgacgacgatgacaaCTACTTTCTAGATGACAATCATGATGTTGGAGACACTTTTGAGGACGGTGTCGTTCACTTCCGGTCCATGAATATCCTGGGCTCCAGCAACTTGTTGATTGGAATGGGCCGTGGAGAGGAGCGTGAACGACAATATTGCCTGCGCCTAAACTGGCTAAAAGAACCTGACTTGTACAAGGAATATGATTTTAACCCACCTTCAGTTTGTCCAAAGAATGAACCATTGCAGTCGAAATGCAGCCCGAACCTTTGCAAACTTGTCAAGTGTGGCGATCACAAAAACGTCACCTGTAGAGTCAATCCATGTGGGTACTGCAGACCTGAGTGTTATGACGCCAATGGAAACCGAGTACAAAGTCCACGTGCCTTAACAAAGTGTGAGAAAGAACGCCTGGAAATCAAATACCGCTACTCTGATGAAATAAGAGTTGTTCCGAGATGCAATGAAGACGGTAGCTTTGCTGAGATTCAATGTCTTCAAAAGGTGAACAAATGCTGGTGTGTTGATGAACATGGAAGGGAAAGAAATGGTACTAGGCAAACGGGAAAACCAAGAAATTGCAAAGCCTCGGGTCCAGTTCTGTCTTCATGTCAGTCATCCATACTAAACATCAAGAACCTTAAGAAGCACTTAAGGAAGATGGCGGCAAACTTCAACGAGACAGCAAAGACCTTGAAATCCAAAGCTGAAAACATGACCCAGAGGATACAACAACAACCCAATCAACAGCGAAACCGAAGCGGGCGTCACCACCAGCGATACATCAGACATCAAATGAACAGGGAAAGAATGTGCCGCTTGGTAGCAAAAAAGACAATGAAGTCGGTGAAGTACATCGCCGAGCCTAAATGCGGTGCGGACGGGAATTACGAAACCATCCAGTGTGAATCGTTAGGGAAGTGGTGTTGGTGCGTCAATGAAAACGGAAAGAGAGTAGGATCGATGAAACTGCTAAAAGAGCTGAACTGTTCCAGCACTGATGAAGGAAGAGGAAAACTTTGCCCTTCTGCGTCTAGCTTTGGATCAGGCGCGGGACAAAATATACAAAGCTCATGCAGAAACGACAGTGACTGCTCTGACTCTCAATTATGTTGCAAGACTAGCCAAAGAGAGCGAGGCTGTGTGGATCCGCCTCCAAAGATGCCAGAAATCAAACCGGGAAGGTGTCCTGACATACCCAATTCCATGAACTACTCCTGCCCGTCCAAATGCAGGACCGATGCAGACTGCCGAGGGGACATGAAGTGCTGTGGAATGGGATGCGTGTGCTCCAAAGGCAAGCCATTCAAACTTTGCATATACGACAAATGCCTCTCATCTCCCGGCTGTCCCAGCCATCCATCAGCCTGTTGTCGTATGAACTATTGTGGAGGATGCACTGCTGAATATTTCGATGAAAATGGTCGCAAAATTGACTGTGATAAAGCAACCCAATGTCAAAAGCAGAGACATGCGGcaacagaaaattataaaagaaaGTTTCTTCAAGTCTATGGTGCAATGCCAAATGGCGTTCCAGGATCTCATCAACAAAGGAATACAACTATGCAAGCTGGAAGGCATCGAGGTAACCAGGGAAGAAGGCAAGAAGACGACCACGGTAGGCGACATTGGAGTGGTAATGGAGGGGTTCATGGCGGAATGCTAGGTGGAGATGACAGAGGAGAACACGACAATCAACAAAGAGGAAATCGAGGGAGTCAAGGTGGGACACAAAGTGGAGTTCACAGTGCAATACAACATAGCAGTCAAAATAGTTCAGATGGAAGGCAACGTGGTGGAGGAGATAAGAGTGGCCAAGGCCAGGGCTCTGGAGGAGATCACAGTCGTAGTAGAGAGGAAGACGGTGGTACAAACAGTGGAGAGCAAAATGAACCAGCTGGTGGACGTGGTCGTCAAAATCAAGACCAAAGAAGGCAGCCAGATCTTGGAATATTCATTCCAGAGTGTAATCTGAAAGATGGAGCTTTCCTAGCGGAGCAGTGTAACTTTACCGCTGGTGAATGCTGGTGTGTGGATGAAAAGGGGCACGAAAAGCCCAACACGCGTGCGCGCGTGCAGCCAGGAACAAGAGACTGCAAGGCTGCATTAACAAAAAGCAGTGAGCAAAGCAAAGGTGTACGGCATGGACCAAAAACCAAAGGCAATCGGAAAACAAAGAGAGTTGGGAAAATAAGCATTAGACTGGAAGGGAATTTTGACGAAGTCCTTAAGAACAAGGATAAATTTATCAACAACTTTAAAGAGGCAGTGGTCCGCGGCACTAAGGTCAAGAAGGAGCAAATTCAGAATGTTGGAATCTCAAGGGGAAGCATCAAGGTGCAATTCGAGATTGTAGAAGAGGAAGACTCGGCTCCACTTGAAGAAATCGTGGAAAACCTCGAGACAGTGGTGAAATCCAAGGCCTTTGTGGTCAAGATGGATGACAAAGAGTATCGTTCTGACGGCACATTTCACGCTGGGGTACACAATCACCGTTCCGATGACACTGCCGATGCTGTTCATAAACGGCAGCTTTCATCAGTTGAGGCGATTGCCATTGGTTCTTGCGCGGCCGCTTGTTTATTGGGAACAGCGGTGTTCGTCTGGAAGTTTTATTGCCGTGGGAGAAAGAAATTAGAGCCTGAAGGCTGGAAGGACATGGTCGAAAAGAAACCTCCAGAGATACAGTTCTACACACCAGATGTTGTGCCGGCAGTGACCACCAACATGACCTCTTCTTGTAAGGTGCCTCAGTTTTCTAGGGGCAATGCTGTTGAAGCCATGCCGGAACCAAGCATTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00086 all species →	Thyroglobulin_1	Thyroglobulin type-1 repeat	Domain	Interproscan
PF00095 all species →	WAP	WAP-type (Whey Acidic Protein) 'four-disulfide core'	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008197 all species →	Domain	WAP-type 'four-disulfide core' domain	Interproscan
IPR000716 all species →	Domain	Thyroglobulin type-1	Interproscan
IPR036857 all species →	Homologous_superfamily	Thyroglobulin type-1 superfamily	Interproscan
IPR043159 all species →	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR036645 all species →	Homologous_superfamily	Elafin-like superfamily	Interproscan
IPR051647 all species →	Family	Mediator complex subunit 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46007 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0030414 all species →	Molecular Function	peptidase inhibitor activity	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_6854.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.