Gene detail

Detailed information of evm.model.contig_69929.2 in Platygyra sinensis

Genomic Location: contig_69929:5370...7463
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_69929.2

ATGGAACTGTTGCCAATCGAACTGGTAACTCAAATATTTGGTTTTCTGCACCCTGTTTACGACAAGCTGGCAAGATTTTCTGTTGTATGCCATCAGTGGAAAGAAATTATCCAGACGACAAATTCACTTTGGGAGCATATTCACCTTAGGCCTCGTCAGCTGACAGAAAAAGAGAAAAACATCGTTTTGACATGTCTTAGAGAATATGATGATTTCATCAAGTGCTTGAGAGTGGCCTCTCTTGACATCGTGTTTGGCGGCGACTTTTGGTTCTTCGTACATCGAGTAACGTTGGAAATGACAAACCTCACGTGTATTGATATACCTACCTTTCCCTGGAACCTTGAACAGTTTGTGACTTTCAAAAGCGCCGAGAAACTAAAAGAACTCAATATTTATGGTTTCTGGGATTTGTCGAATACACAATGGACTCAAAACTTCAGGCAGCCAGTGTCACTGATTAGTCCAGGACATCTTCAACTTGTCAAAGAAAGATGCATAAAATTGGAAGTGTTAAAGTTGTCGATTAACATGCTCCGAGTGCCAGAAAAGGCTTTGATCGACTTTGTAAACGCCCTCGATCTCAAAGAATTACAAATATCTGCTTATAACAGTAGTGAAGCCAGCATCTCGATGAATCGGAACAGTGTAAGACTTTTAAGATGTCTTTTATTATCAAAGTACGTCTCAAAAATTACAAAGCTTGACCTTAGGTATGTCTCCATCGGCCACAAAGAGCTAAGACTACTACTGAAGCGTCTCAAATCATTGAGGCATTTGAAACTTTGCTTCCTCGATAATCACCGCTGTATGACAGGGTATCAATATCTTGATTCAAAAAGCTTGGAATATTTTGAGTTGGATGACCTACCAGCGAAAAATATTATGCGGTTAAAGTGTTCAATGCCCAAGTTAAGGGCTTTCTTTTTTAGTAGTTGCAACAACTTGAAATCTCTTCAAGTCGTGTCTTCCAGGCTGGAGCGGTTGTTCCTTAACTTCCTTGAAAACCTGAAATCACTGCATATCACATCCACGACTCTCAAGCGCTTTGAGGTCGCAAACTGTGGATCACTAACTTCAAAGACAATCGAAAAAGTTCTACAGCATAACCGGAGGATTGAACATTGCACTATTAGAGGACATCTTGTGAATGAGTTTCAGTTATCCCAAATGGAAACCAGTGGAGTTTTGACAGAATTGTGTCTGTGGATAACAGATTTTTTCAGACTGCAGCAAATTCGTGTCCATTGCCCAACATTAAAATCATTTATGTGCAACTATCACAACACAGCGGATCATGAGGAGTTCTCCATGACAACACCAGAGTGCTGCATAGATGTGCAGTGCAACATTCTTCTTGATGCTTACATTTCCCTGCCGAGGATAGATTCTATGGATATCAAGTGCAAGGCAATAAAGCACCTTCTGCTAAATGTCGGCCAAAAGAAACGTGACACACCTTGCCGCATCGTGCGAATATCTGCAGAAAAAAGACTGAGGACATTTTGTGCCAGCAGGTGTATCTTCACTCGAGTGGAAATTAATGCAGAGGAAACAGATAACTTACATTTTAACAGTTGTAGAATCAGTGAGTTACAATTGGAAGGTAACTGTATTGACATGATCGTAATGCGAAATGTTAAACAATCTCAAGAGAATATAGACCTGATTGCAAGGTGCAAAGAAATAAGGAAAGTAATTTTAAGGGAATGCGATACTCTACGCTCAGTGACTGTATTTCCTGATGAAAAGCAGTTCAACGACACCTCCCAGATTGATTATAGCCAGTTGCAGTCTCTACAGATGCCTCCAGCTGCTTCATATAATGTACAGGAAGATGTCCGCCATGGCGTTGCAGAGGAAGACTCAAAGTCAGGAGTGCGAGTTGGCTCTGAGATAAAGCAAATGATTAAAACAGTCGCAGCGCTAAATTGCCCTTGTTTCCGCGGCTTGGTGATATTTAATACAAACAAAAATGAGAGTAACTTAAAGCTGTCGTCAGGACAACAGCATTCAGCTTTTTGCAGTGAGAAAAATCCCGGAACATCGGCTGAAGATGTCAGTTCAAGAGAGCAATTTGGCTTTCAACGATAA

Transcript

evm.model.contig_69929.2

ATGGAACTGTTGCCAATCGAACTGGTAACTCAAATATTTGGTTTTCTGCACCCTGTTTACGACAAGCTGGCAAGATTTTCTGTTGTATGCCATCAGTGGAAAGAAATTATCCAGACGACAAATTCACTTTGGGAGCATATTCACCTTAGGCCTCGTCAGCtgacagaaaaagagaaaaacatcgTTTTGACATGTCTTAGAGAATATGATGATTTCATCAAGTGCTTGAGAGTGGCCTCTCTTGACATCGTGTTTGGCGGCGACTTTTGGTTCTTCGTACATCGAGTAACGTTGGAAATGACAAACCTCACGTGTATTGATATACCTACCTTTCCCTGGAACCTTGAACAGTTTGTGACTTTCAAAAGCGCCGAGAAACTAAAAGAACTCAATATTTATGGTTTCTGGGATTTGTCGAATACACAATGGACTCAAAACTTCAGGCAGCCAGTGTCACTGATTAGTCCAGGACATCTTCAACTTGTCAAAGAAAGATGCATAAAATTGGAAGTGTTAAAGTTGTCGATTAACATGCTCCGAGTGCCAGAAAAGGCTTTGATCGACTTTGTAAACGCCCTCGATCTCAAAGAATTACAAATATCTGCTTATAACAGTAGTGAAGCCAGCATCTCGATGAATCGGAACAGTGTAAGACTTTTAAGATGTCTTTTATTATCAAAGTACGTCTCAAAAATTACAAAGCTTGACCTTAGGTATGTCTCCATCGGCCACAAAGAGCTAAGACTACTACTGAAGCGTCTCAAATCATTGAGGCATTTGAAACTTTGCTTCCTCGATAATCACCGCTGTATGACAGGGTATCAATATCTTGATTCAAAAAGCTTGGAATATTTTGAGTTGGATGACCTACCAGCGAAAAATATTATGCGGTTAAAGTGTTCAATGCCCAAGTTAAGGGCTTTCTTTTTTAGTAGTTGCAACAACTTGAAATCTCTTCAAGTCGTGTCTTCCAGGCTGGAGCGGTTGTTCCTTAACTTCCTTGAAAACCTGAAATCACTGCATATCACATCCACGACTCTCAAGCGCTTTGAGGTCGCAAACTGTGGATCACTAACTTCAAAGACAATCGAAAAAGTTCTACAGCATAACCGGAGGATTGAACATTGCACTATTAGAGGACATCTTGTGAATGAGTTTCAGTTATCCCAAATGGAAACCAGTGGAgttttgacagaattgtgtctGTGGATAACAGATTTTTTCAGACTGCAGCAAATTCGTGTCCATTGCccaacattaaaatcatttatgTGCAACTATCACAACACAGCGGATCATGAGGAGTTCTCCATGACAACACCAGAGTGCTGCATAGATGTGCAGTGCAACATTCTTCTTGATGCTTACATTTCCCTGCCGAGGATAGATTCTATGGATATCAAGTGCAAGGCAATAAAGCACCTTCTGCTAAATGTCGGCCAAAAGAAACGTGACACACCTTGCCGCATCGTGCGAATATCTGCAGAAAAAAGACTGAGGACATTTTGTGCCAGCAGGTGTATCTTCACTCGAGTGGAAATTAATGCAGAGGAAACAGATAACTTACATTTTAACAGTTGTAGAATCAGTGAGTTACAATTGGAAGGTAACTGTATTGACATGATCGTAATGCGAAATGTTAAACAATCTCAAGAGAATATAGACCTGATTGCAAGGTGCAaagaaataaggaaagtaatttTAAGGGAATGCGATACTCTACGCTCAGTGACTGTATTTCCTGATGAAAAGCAGTTCAACGACACCTCCCAGATTGATTATAGCCAGTTGCAGTCTCTACAGATGCCTCCAGCTGCTTCATATAATGTACAGGAAGATGTCCGCCATGGCGTTGCAGAGGAAGACTCAAAGTCAGGAGTGCGAGTTGGCTCTGAGATAAAGCAAATGATTAAAACAGTCGCAGCGCTAAATTGCCCTTGTTTCCGCGGCTTGGTGATATTTAATACAAACAAAAATGAGAGTAACTTAAAGCTGTCGTCAGGACAACAGCATTCAGCTTTTTGCAGTGAGAAAAATCCCGGAACATCGGCTGAAGATGTCAGTTCAAGAGAGCAATTTGGCTTTCAACGATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16134 all species →	F-BOX/TPR REPEAT PROTEIN POF3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_69929.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.