Detailed information of evm.model.contig_69948.4 in Platygyra sinensis

Genomic Location: contig_69948:23826...30140
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
No Pfam domain signature was detected for evm.model.contig_69948.4. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR040176
all species →		FamilyRING finger protein RNF121/RNF175Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13407
all species →		RNF121 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000139
all species →		Cellular ComponentGolgi membraneInterproscan
GO:0005789
all species →		Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0030433
all species →		Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15698RNF121_175; RING finger protein 121/175-Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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