Gene detail

Detailed information of evm.model.contig_70689.3 in Platygyra sinensis

Genomic Location: contig_70689:6318...20876
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_70689.3

ATGAAGATGGCTTCTCAGGAGTTGTACAGCACATGTCAGCCTCCATTTACTACAAGGGCCTGTTCACATGGAGGTGGGGGACCCCAGTTCTCCACTGGTTTGCGACATTTCTTACAAATTATTTGTGTGGCTATGGCCTCGTTTGCAGAAGGGTATCATCGGCACAAAATGAGCGGTGTTGCACTTGCCACAGTGTCTTTCTTGAACAGTGGAAAATATACTGTGAACCCTGAAATGAGGGCCAAAATGATTGTAGATGTCACTCAGAAGACCAATATGGATTTTTGCAAAGCTTTCTGGAGCTTGACAGAAGGTTATGGGATTCAGCATGTTCCACTGCTGGTTTGTTCGGCAATGAAGGTGAACAGAGTATTCCATATTCCTCCTGATCCTTTTGAACTCCTCACGTTGAATGGCGAGTCTGTGAGTATTGCTCCCCCCTGTTCCTGGTCAGGTCTTGCCCCAGTCCAAGTGCGACTTCTCTCATATGAGTGGAGGGATGGACAGAGCAAAGATGGCAAACAAAATCCTACCCATCATGGCCGATCACCAAAACCTAAAAGTGACGGCTTTTTACTTCACGTGCATGGTGGAGGGTTTGTTGCTCAATCATCGAAATCACATGAGATGTACCTTCGCACATGGGCGTGTGAGCTTGGTGTACCCATCTTATCAATAGATTACTCTCTGGCCCCCGAGGCACCGTTCCCACGTGCCTTGGAGGAGTGTTTCTTTGTGTACGCCTGGTGTTTAAACAATTTTCACCTCCTGGGCACTACTGGAAAGTGTTTCTGTTTAGCTGGAGACTCTGCAGGTGGTAACTTGTGTGTTTCACTAAGCATGCGTGCAGCTGAATATGGTATCCGCATACCAGACTCTATCCTCGCGGCCTATGCACCGTTCAATGTACAGTGGGTACCCTCGCCATCCCGTCTCCTGAGCCTCATGGATCCACTTCTACCCACCGGAGTACTGGGTGCGTGTCTAGCGGCATACTCTGGCATGGGCAAGTCACCCTTTGATGACTGCACCAAGAATTCCATTAAATCTCTGACAGGCAAAACTAGTCAGCCGGTGAATATTGTCAGCAGAAGAACAAAGACGAACTCTCTGTTACGCCTCTTTAAAGTTGGCTCCAAGGAGAACAAGAAAGCAAGAAGCAGTAGTTATTTGGATACTCATTTGCAATCGGACCCGGAGAGTTTTCATAGCTGTGCTAGCTCACCGCAGAGTCTTCAGTCTGCTTCTGTTAAACACGCAGCGAACTCGAGTAGCGAAGTAGTTGTTAGTTGTCATTGTGCGAAAAGTGTGCCAGTCTGTAATGGAGTGGTGCATCATTCTTCAGAAACACAGGTAGAACATGCTGCTTCAGATCAGGAAAAGGACTATGAAAGTAGCCTCACTTCATCGGGCCATCCACAGTCAAGAAAACATTCACAAGACACTATACCAAGTAGATCCACGAGCCCTCAAACAGACCACAGAGAGACGGACCATTTAGGAGTGCACTACCATAAGGACATCGAGGAGTGCCATGTGGTGAACGTAGTGGAATCAGCAGAAAGCCCCTCTGGAGAGCTCCTTTTGTGTCCTCTTGATGCACCTGAAGATAGAGTCTATTTGGAGGTCGGTACGCCGCCAGATGAGGACGAGGAAGTGGGGCTTGATGATAGGACCACGTCTATGTCCCAAGTTTGCCTTCCTATTGTCAAGAACCCGTACATGTCGCCATTGCTGGCTCCTGATGACATGCTGAAGAGTTTGCCTCCAATCGATTTAGTGGCCTGCACACTGGATCCTATCCTGGATGACTCGGTCGAGTTTGCCCGAAGGCTTCGCTCCCTGGAGAAGGACGTGGAACTGTACATCTTAGAAGATTTACCCCATGGGTTTTTGAACTTCCATCTTGTCAGTCAAGAGGCAAGGGAAGGGAATGAACTCTGTGTAGTGTGCTTGAAAAGAACGTTGTCAGGAAAGCGCAAAATAGGCCACACAGAAAAGGCTCCTGTGTACTGA

Transcript

evm.model.contig_70689.3

ATGAAGATGGCTTCTCAGGAGTTGTACAGCACATGTCAGCCTCCATTTACTacaagggcctgttcacatggaggtgggggaccccagttcTCCACTGGTTTGCGACATTTCTTACAAATTATTTGTGTGGCTATGGCCTCGTTTGCAGAAGGGTATCATCGGCACAAAATGAGCGGTGTTGCACTTGCCACAGTGTCTTTCTTGAACAGTGGAAAATATACTGTGAACCCTGAAATGAGGGCCAAAATGATTGTAGATGTCACTCAGAAGACCAATATGGATTTTTGCAAAGCTTTCTGGAGCTTGACAGAAGGTTATGGGATTCAGCATGTTCCACTGCTGGTTTGTTCGGCAATGAAGGTGAACAGAGTATTCCATATTCCTCCTGATCCTTTTGAACTCCTCACGTTGAATGGCGAGTCTGTGAGTATTGCTCCCCCCTGTTCCTGGTCAGGTCTTGCCCCAGTCCAAGTGCGACTTCTCTCATATGAGTGGAGGGATGGACAGAGCAAAGATGGCAAACAAAATCCTACCCATCATGGCCGATCACCAAAACCTAAAAGTGACGGCTTTTTACTTCACGTGCATGGTGGAGGGTTTGTTGCTCAATCATCGAAATCACATGAGATGTACCTTCGCACATGGGCGTGTGAGCTTGGTGTACCCATCTTATCAATAGATTACTCTCTGGCCCCCGAGGCACCGTTCCCACGTGCCTTGGAGGAGTGTTTCTTTGTGTACGCCTGGTGTTTAAACAATTTTCACCTCCTGGGCACTACTGGAAAGTGTTTCTGTTTAGCTGGAGACTCTGCAGGTGGTAACTTGTGTGTTTCACTAAGCATGCGTGCAGCTGAATATGGTATCCGCATACCAGACTCTATCCTCGCGGCCTATGCACCGTTCAATGTACAGTGGGTACCCTCGCCATCCCGTCTCCTGAGCCTCATGGATCCACTTCTACCCACCGGAGTACTGGGTGCGTGTCTAGCGGCATACTCTGGCATGGGCAAGTCACCCTTTGATGACTGCACCAAGAATTCCATTAAATCTCTGACAGGCAAAACTAGTCAGCCGGTGAATATTGTCAGCAGAAGAACAAAGACGAACTCTCTGTTACGCCTCTTTAAAGTTGGCTCCAAGGAGAACAAGAAAGCAAGAAGCAGTAGTTATTTGGATACTCATTTGCAATCGGACCCGGAGAGTTTTCATAGCTGTGCTAGCTCACCGCAGAGTCTTCAGTCTGCTTCTGTTAAACACGCAGCGAACTCGAGTAGCGAAGTAGTTGTTAGTTGTCATTGTGCGAAAAGTGTGCCAGTCTGTAATGGAGTGGTGCATCATTCTTCAGAAACACAGGTAGAACATGCTGCTTCAGATCAGGAAAAGGACTATGAAAGTAGCCTCACTTCATCGGGCCATCCACAGTCAAGAAAACATTCACAAGACACTATACCAAGTAGATCCACGAGCCCTCAAACAGACCACAGAGAGACGGACCATTTAGGAGTGCACTACCATAAGGACATCGAGGAGTGCCATGTGGTGAACGTAGTGGAATCAGCAGAAAGCCCCTCTGGAGAGCTCCTTTTGTGTCCTCTTGATGCACCTGAAGATAGAGTCTATTTGGAGGTCGGTACGCCGCCAGATGAGGACGAGGAAGTGGGGCTTGATGATAGGACCACGTCTATGTCCCAAGTTTGCCTTCCTATTGTCAAGAACCCGTACATGTCGCCATTGCTGGCTCCTGATGACATGCTGAAGAGTTTGCCTCCAATCGATTTAGTGGCCTGCACACTGGATCCTATCCTGGATGACTCGGTCGAGTTTGCCCGAAGGCTTCGCTCCCTGGAGAAGGACGTGGAACTGTACATCTTAGAAGATTTACCCCATGGGTTTTTGAACTTCCATCTTGTCAGTCAAGAGGCAAGGGAAGGGAATGAACTCTGTGTAGTGTGCTTGAAAAGAACGTTGTCAGGAAAGCGCAAAATAGGCCACACAGAAAAGGCTCCTGTGTACTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06350 all species →	HSL_N	Hormone-sensitive lipase (HSL) N-terminus	Family	Interproscan
PF07859 all species →	Abhydrolase_3	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002168 all species →	Active_site	Lipase, GDXG, putative histidine active site	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR010468 all species →	Domain	Hormone-sensitive lipase, N-terminal	Interproscan
IPR013094 all species →	Domain	Alpha/beta hydrolase fold-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23025 all species →	TRIACYLGLYCEROL LIPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0008203 all species →	Biological Process	cholesterol metabolic process	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan
GO:0004771 all species →	Molecular Function	sterol ester esterase activity	Interproscan
GO:0004806 all species →	Molecular Function	triacylglycerol lipase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019433 all species →	Biological Process	triglyceride catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_70689.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.