Gene detail

Detailed information of evm.model.contig_70899.3 in Platygyra sinensis

Genomic Location: contig_70899:18214...28063
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_70899.3

ATGGGTCTGTTGTCAGATGTTCATGGTAGGAAGAAAATTGTAGATATCTTAGTGGCCCACTGTTCAAAATTGTGTATACTTAGTTATATTATTGGCATTGTCTGGCTGTGTGCCTTGTCTGATCGAACATTCAATGGCCGGGTTTATTTTTCTGAAAATGCATTGCTACCTGGATTGGTTGAAGCAGAATACAAGAATCACAGACTTGCTTCTGAGTTGTATGGGAAGTTATCGACACTACCAGAAGGGAATATGAGCTCTGCTGCATCGCAGATGATCATGGATACAATGGAAAATATTGGCCTTCAGACCTATCAGCAGAACTTCACAGTCCACTTGCCATTTCCTGGTGTTTCAGAGCTGCCAGATGTGGCTGGCTTGAATGTTTATGGCATTCTCAGGGCTCCCAGGATAGCAGGCACTGAGGCAGTAGTCATTAGTGTTCCTTATAACCAAGGCAATAACAAAGGAGCTCTGGCGTTAATGCTTTCATTTGCTGACCATTGTCGGAGAAAAAGTTACTGGTCAAAGGATATCATATTTCTTGTGACAGATAAGGATCAGCTTGGAATGCAGGCCTGGCTTGATGCTTACCATGGTCTTCCAAATTTTTATATTTCTTCTGCTCCACTTGAAGGACATTCTGGTTCTATTCAAGCTGCATTGAACTTAGAGTTTCCACATGAAAAAGTCAACTCCTTTAAGATTGCTATTGAAGGAATAAATGGACAACTGCCTAATCTTGATCTAGTCAATACTGTGTTCAGGCTGTGCCGTAAAGAGCGTATTCCAGCATCCCTGCATACAGAGGGATACCATGAACACTTAGGAGCCTGGGCAGACTCTGTGCAGTCCCTTGTTACCATGGTGATGATGATGTTTTATCAAGCGTCTGGTAGGGCTTCTGGAAATCATGGCTTATTTCACAGATATCGCATTGAAGCTCTCACGATGAAGGGAGGTGGAGAGACATGGGAGTATGGACGTGGATTTCTGGAAACTGGAAAAGTCATTGAAGGTATTGTCCGCAGCTTAAACAACCTCTTGGAACAGTTCCACCAGTCATTTTTCTTCTACCTTCTCCCAGAGTCGCATCGATATGTGTCTATTGGTATGTACATGCCACCCCTTGGCTGCCTTCTTCTAGGCCCTGCCATCATGGCTATAGTTCTCTGGACATTAGCAGGGTCTGCCACAGAGAATGGGTCAAAGGTTGAAACCTTGCAAGAGGGAAGGACCCCAGAGGAAGAATCAAGAGGAAAGAAAGCTGCGAGCAGTGAAGGTAGCGAAAAAGATGCTCCTAATCTGGAAGAAAAGGGGGCTCGGTGTTACTGTTTAATGCTTTCATCAAGCATACGGCGAGGCTATGAAGTTTATAGACAAGTTTGTGCTGCCTGTCATTCAATGGACCAGTTAGCGTATCGTCATCTTGTGGGTGTAGCTTACACTGAGGATGAAATGAAAGCTATTGCCGCAGAGGCTCAGATTGAAGATGGCCCTGATGATGACGGAAACATGTTCACAAGGCCAGGAAAGTTGTCAGATAGTTTCCCCAAGCCATATCCTAATGAACAAGCTGCTAGAGCTGCTAACGTCGGTGCCTACCCACCAGATCTGAGTCTTATAACATCAGCAAGACATGGAGGAGAGGACTATGTGTTTGCCATCCTTACGGGATACATGGATCCTCCTGCAGGGGTAGAGGTTAAGGAAGACTTGTACTTCAATCCTTATTTCCCTGGCCAGTCGATAGCCATGGCACCAGCATTGTACAATGAAATCATCGAATACGAGGATGGTACTCCTGCTACTGTCAGTCAGCTGGCAAAAGATGTGTGCACATTCCTTAAATGGGCTGCAGAACCTGAACACGATGATCGAAAACGAATGGGAATGAAGGCGGTTGTTCTTCTGGGATGCTTAAGTTTTGTCGCCTACTACTACAAACGACACAAGTGGTCCGTGCTAAAGAGTCGAAAGATCGTGTATCGCCCTTCACCCCACTCCTGA

Transcript

evm.model.contig_70899.3

ATGGGTCTGTTGTCAGATGTTCATGGTAGGAAGAAAATTGTAGATATCTTAGTGGCCCACTGTTCAAAATTGTGTATACTTAGTTATATTATTGGCATTGTCTGGCTGTGTGCCTTGTCTGATCGAACATTCAATGGCCGGGTTTATTTTTCTGAAAATGCATTGCTACCTGGATTGGTTGAAGCAGAATACAAGAATCACAGACTTGCTTCTGAGTTGTATGGGAAGTTATCGACACTACCAGAAGGGAATATGAGCTCTGCTGCATCGCAGATGATCATGGATACAATGGAAAATATTGGCCTTCAGACCTATCAGCAGAACTTCACAGTCCACTTGCCATTTCCTGGTGTTTCAGAGCTGCCAGATGTGGCTGGCTTGAATGTTTATGGCATTCTCAGGGCTCCCAGGATAGCAGGCACTGAGGCAGTAGTCATTAGTGTTCCTTATAACCAAGGCAATAACAAAGGAGCTCTGGCGTTAATGCTTTCATTTGCTGACCATTGTCGGAGAAAAAGTTACTGGTCAAAGGATATCATATTTCTTGTGACAGATAAGGATCAGCTTGGAATGCAGGCCTGGCTTGATGCTTACCATGGTCTTCCAAATTTTTataTTTCTTCTGCTCCACTTGAAGGACATTCTGGTTCTATTCAAGCTGCATTGAACTTAGAGTTTCCACATGAAAAAGTCAACTCCTTTAAGATTGCTATTGAAGGAATAAATGGACAACTGCCTAATCTTGATCTAGTCAATACTGTGTTCAGGCTGTGCCGTAAAGAGCGTATTCCAGCATCCCTGCATACAGAGGGATACCATGAACACTTAGGAGCCTGGGCAGACTCTGTGCAGTCCCTTGTTACcatggtgatgatgatgtttTATCAAGCGTCTGGTAGGGCTTCTGGAAATCATGGCTTATTTCACAGATATCGCATTGAAGCTCTCACGATGAAGGGAGGTGGAGAGACATGGGAGTATGGACGTGGATttctggaaactggaaaAGTCATTGAAGGTATTGTCCGCAGCTTAAACAACCTCTTGGAACAGTTCCACCAGTCATTTTTCTTCTACCTTCTCCCAGAGTCGCATCGATATGTGTCTATTGGTATGTACATGCCACCCCTTGGCTGCCTTCTTCTAGGCCCTGCCATCATGGCTATAGTTCTCTGGACATTAGCAGGGTCTGCCACAGAGAATGGGTCAAAGGTTGAAACCTTGCAAGAGGGAAGGACCCCAGAGGAAGAATCAAGAGGAAAGAAAGCTGCGAGCAGTGAAGGTAGCGAAAAAGATGCTCCTAATCTGGAAGAAAAGggGGCTCGGTGTTACTGTTTAATGCTTTCATCAAGCATACGGCGAGGCTATGAAGTTTATAGACAAGTTTGTGCTGCCTGTCATTCAATGGACCAGTTAGCGTATCGTCATCTTGTGGGTGTAGCTTACACTGAGGAtgaaatgaaagctattgcCGCAGAGGCTCAGATTGAAGATGGCCCTGATGATGACGGAAACATGTTCACAAGGCCAGGAAAGTTGTCAGATAGTTTCCCCAAGCCATATCCTAATGAACAAGCTGCTAGAGCTGCTAACGTCGGTGCCTACCCACCAGATCTGAGTCTTATAACATCAGCAAGACATGGAGGAGAGGACTATGTGTTTGCCATCCTTACGGGATACATGGATCCTCCTGCAGGGGTAGAGGTTAAGGAAGACTTGTACTTCAATCCTTATTTCCCTGGCCAGTCGATAGCCATGGCACCAGCATTGTACAATGAAATCATCGAATACGAGGATGGTACTCCTGCTACTGTCAGTCAGCTGGCAAAAGATGTGTGCACATTCCTTAAATGGGCTGCAGAACCTGAACACGATGATCGAAAACGAATGGGAATGAAGGCGGTTGTTCTTCTGGGATGCTTAAGTTTTGTCGCCTACTACTACAAACGACACAAGTGGTCCGTGCTAAAGAGTCGAAAGATCGTGTATCGCCCTTCACCCCACTCCTGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004800 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02167 all species →	Cytochrom_C1	Cytochrome C1 family	Family	Interproscan
PF04114 all species →	Gaa1	Gaa1-like, GPI transamidase component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036909 all species →	Homologous_superfamily	Cytochrome c-like domain superfamily	Interproscan
IPR007246 all species →	Family	GPI transamidase component Gaa1	Interproscan
IPR002326 all species →	Family	Cytochrome c1	Interproscan
IPR021157 all species →	Homologous_superfamily	Cytochrome c1, transmembrane anchor, C-terminal	Interproscan
IPR009056 all species →	Domain	Cytochrome c-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13304 all species →	GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_70899.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.