Gene detail

Detailed information of evm.model.contig_72499.3 in Platygyra sinensis

Genomic Location: contig_72499:6075...22871
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_72499.3

ATGAAGTGCTTTATAGGTAAAGAGAAGAAGCTTGAAGATAACACGATGTTCTATAGGGAGCCAGTGCAGATTGATAAGAACTGGATTCCTGTGGTACCTGCAAGCGAGAACGCCACGGACCTGTGGGAGGCCATTAAACCTGAGGTGCAAGCCACTATTGAAGAATATCTAGATCAGGACGAGATAATTGATGAAGATGATGGACCGGTGGAGTTTCAAGGAGATCTGGACACTGCTCTTGAATGTGCTCTGAAGCAGATCAGAGATAATCTAAGCCAAGGCCATCACAAAAAAGCTCTTGCAGTGCTGAAGGCTGCCATGGTAACATGGCCAGAGTACGATATGTTTGTTACTCAAGAAAAGGACGAGGAACAGAAGGAGGATGAAGAAAGCGGGGTAAACGATAACCAGAAAGGGTCTGTTGAAGAACAGCTGTCAATCATGAAAGCAATATTTCTTGGTGCTGGCGACAGTGAAGAAGCAGCCCCTCGAGTTGAAGGCACGGACATTGATCCTACAGAACTGCTTGAAGTTTCCGCTGAACTTGAAAACCAAGGCTCTTCAGCCGACCAGCCTTGCAATGGACCTGTTAATGACATCACTAAACAACAACTGATTGTTCAGTTTTTGAAGGATTATGTTCATTTCCAAACCCTAATGGAGAAAGCCGTCCCAACAGTGTGCCAGCTTCTAGGCTCTAAGACCATTTCAGACGTGAATGAGTCTATTGAGTTCTTTGTGGTAGCTTCTGAATTTGGCCTGCAGTCAGCCATCATTGGTGTGCGGAGGATGCTGGTATTGATCTGGTCACGTGATACTGCTGTCCGTGATGCAGTGGTGGAAGCGTACAAAGGGTTGTATTTAGACCCAGTGGCGCTAAATGCTCGAGCAAAAACAGCAGTGATTGTGAAAAACCTGATCGCTCTGACTCAAGGAGCATCGATTGGAGACCTCACATCTTTAGAAGAGTTGATGAGTGAGCTGATGAAAGGAAAACTGATCCCTGCTGCCGTCATAAAACTGCTATGGGAGAAATTTACAATGAAGGTTCCGCAGACCACCCCAGAGGAAAGCAGACTGGCATTAGTTCTCCTGGGAATGTTGGCAGGGGCCGAGATGGACATTGTACGTAGTAACATTGACGTGTTGGTTTCCTTTGGCCTGGGACCGAGAGCAGAAGAGGACTTCCTTTTAGCACGTGACACTTGCGTGGCGTTGTTAAAGCTTGGCAAAACCCATAAGAAACCCGGGTGCAGTGCTGAAGAGCCATTTAGGCTTGCTTCCAGTCACGTGATATTTGAACGGCTCACGGCAATTGTCGTTTCAGGTGTCCGTAAGCTTGATAAACCTGAGTGGACCCCTATGATGGAACAAGCATTGAATGTAATCTACTTTCTTGCTGAACATCCTGAGAAGATAGCTGAGAACCTCGTCAAGAAAATAGCGGCATGTTTGCTGGATAAAACAACACAGGACAAAGCTACTTCAGAGGAAGAACAGGGATCTCAAGACAAGGAAAACGATTCACAGGAAGCCATCACACAGCAAGGAACTCGCTCCATTAGTTCTCCAACCGCGTGCCATGCTGGTATTTTGGCGCGATTTCTTAGCTTGTCTGGTCACGTGGCGTTACGTCATATGGTTCACTTGGACGTAGGGGTACTGGGGGAAATCAAACGAAGACAAGTGATCGAGGAGAACGATAAGGAGAAAGAAAAACAATCCAAGAAAACGAGAGGGACTGGAAGCGAGTCCACTGTCAATTCTACCAAGGATTCAGGTCCGTCGGAGACCATCGAGGAGGAACTGGGACTAACTGGAGCTACGGCTGATGACGTAGAGACGGAATATGTGAGAAAGATCTGTGAACACGAGATTGTTACTGGTGGAACTTTGTTGGCTTCCTTGCGCCCGCTGTTAGTGTGTGTCTGCAGTAATCCTGTGAAGTACAGTGATCCAAACCTGCGAGCATCAGCTTCACTGGCTCTTGCAAAGTTCATGTTAGTCAGTTCTGAGTTTTGTGAAGAGCATCTTCAACTTCTGTTCACGATTCTTGAAAAGGCTCCTCAACCGACCATCAGAGCGAATACGATTGTGGCAGTTGGTGACCTGACCTTCAGATTTCCCAACTTGATTGAACCATGGACGTCTCATCTCTATGCCAGATTGCGTGACGAGTCAAGTCACGTGCGTAAGAACACGCTGATGGTACTGACGCATCTGATTCTGAATGACATGGTCAAGGTCAAAGGTCAGATCAGTGAGATGGCCACGTGTTTAGAAGATAAAGACAACAGGATATCCGATCTAGCCAAGCTGTTCTTTTTGGAATTGTCAAAGAAGGGCAACGCAATATACAACATTCTTCCAGACGTGATAAGTCGGTTATCAGACCCTGATTGTGGTATTGAAGAAGAACCTTTCAGAAATATCATGAGGTATTTGCTGTCCTTTATTCAGAAGGATCGTCAGTCTGAGAGCCTTGTGGAGAAACTGTGCCACAGATTCAGAGCAACCAAAACCGAGCGCCAGTGGCGTGATCTAGCCTTCTGTCTGTCCATGTTGTCATATAACGAGCGCGGAATCCGCAAACTACAGGAGAACTTCACTTGCTTCCACGACAAACTGGCTGAGGAAGACGTGTACCAGTCATTCCTGACCATTGTCGGCAAGAGTAAGAAATTTGCCAAACCAGAAGTCAAGGTAACCTTTATTCTTTAG

Transcript

evm.model.contig_72499.3

ATGAAGTGCTTTATAGGTAAAGAGAAGAAGCTTGAAGATAACACGATGTTCTATAGGGAGCCAGTGCAGATTGATAAGAACTGGATTCCTGTGGTACCTGCAAGCGAGAACGCCACGGACCTGTGGGAGGCCATTAAACCTGAGGTGCAAGCCACTATTGAAGAATATCTAGATCAGGACGAGATAATTGATGAAGATGATGGACCGGTGGAGTTTCAAGGAGATCTGGACACTGCTCTTGAATGTGCTCTGAAGCAGATCAGAGATAATCTAAGCCAAGGCCATCACAAAAAAGCTCTTGCAGTGCTGAAGGCTGCCATGGTAACATGGCCAGAGTACGATATGTTTGTTACTCAAGAAAAGGACGAGGAACAGAAGGAGGATGAAGAAAGCGGGGTAAACGATAACCAGAAAGGGTCTGTTGAAGAACAGCTGTCAATCATGAAAGCAATATTTCTTGGTGCTGGCGACAGTGAAGAAGCAGCCCCTCGAGTTGAAGGCACGGACATTGATCCTACAGAACTGCTTGAAGTTTCCGCTGAACTTGAAAACCAAGGCTCTTCAGCCGACCAGCCTTGCAATGGACCTGTTAATGACATCACTAAACAACAACTGATTGTTCAGTTTTTGAAGGATTATGTTCATTTCCAAACCCTAATGGAGAAAGCCGTCCCAACAGTGTGCCAGCTTCTAGGCTCTAAGACCATTTCAGACGTGAATGAGTCTATTGAGTTCTTTGTGGTAGCTTCTGAATTTGGCCTGCAGTCAGCCATCATTGGTGTGCGGAGGATGCTGGTATTGatctggtcacgtgatactgctGTCCGTGATGCAGTGGTGGAAGCGTACAAAGGGTTGTATTTAGACCCAGTGGCGCTAAATGCTCGAGCAAAAACAGCAGTGATTGTGAAAAACCTGATCGCTCTGACTCAAGGAGCATCGATTGGAGACCTCACATCTTTAGAAGAGTTGATGAGTGAGCTGATGAAAGGAAAACTGATCCCTGCTGCCGTCATAAAACTGCTATGGGAGAAATTTACAATGAAGGTTCCGCAGACCACCCCAGAGGAAAGCAGACTGGCATTAGTTCTCCTGGGAATGTTGGCAGGGGCCGAGATGGACATTGTACGTAGTAACATTGACGTGTTGGTTTCCTTTGGCCTGGGACCGAGAGCAGAAGAGGACTTCCTTTTAGCACGTGACACTTGCGTGGCGTTGTTAAAGCTTGGCAAAACCCATAAGaaACCCGGGTGCAGTGCTGAAGAGCCATTTAGGCTTGCTTCCAGTCACGTGATATTTGAACGGCTCACGGCAATTGTCGTTTCAGGTGTCCGTAAGCTTGATAAACCTGAGTGGACCCCTATGATGGAACAAGCATTGAATGTAATCTACTTTCTTGCTGAACATCCTGAGAAGATAGCTGAGAACCTCGTCAAGAAAATAGCGGCATGTTTGCTGGATAAAACAACACAGGACAAAGCTACTTCAGAGGAAGAACAGGGATCTCAAGACAAGGAAAACGATTCACAGGAAGCCATCACACAGCAAGGAACTCGCTCCATTAGTTCTCCAACCGCGTGCCATGCTGGTATTTTGGCGCGATTTCTTAGCTTGTCTGGTCACGTGGCGTTACGTCATATGGTTCACTTGGACGTAGGGGTACTGGGGGAAATCAAACGAAGACAAGTGATCGAGGAGAACGATaaggagaaagaaaaacaatcCAAGAAAACGAGAGGGACTGGAAGCGAGTCCACTGTCAATTCTACCAAGgATTCAGGTCCGTCGGAGACCATCGAGGAGGAACTGGGACTAACTGGAGCTACGGCTGATGACGTAGAGACGGAATATGTGAGAAAGATCTGTGAACACGAGATTGTTACTGGTGGAACTTTGTTGGCTTCCTTGCGCCCGCTGTTAGTGTGTGTCTGCAGTAATCCTGTGAAGTACAGTGATCCAAACCTGCGAGCATCAGCTTCACTGGCTCTTGCAAAGTTCATGTTAGTCAGTTCTGAGTTTTGTGAAGAGCATCTTCAACTTCTGTTCACGATTCTTGAAAAGGCTCCTCAACCGACCATCAGAGCGAATACGATTGTGGCAGTTGGTGACCTGACCTTCAGATTTCCCAACTTGATTGAACCATGGACGTCTCATCTCTATGCCAGattgcgtgacgagtcaAGTCACGTGCGTAAGAACACGCTGATGGTACTGACGCATCTGATTCTGAATGACATGGTCAAGGTCAAAGGTCAGATCAGTGAGATGGCCACGTGTTTAGAAGATAAAGACAACAGGATATCCGATCTAGCCAAGCTGTTCTTTTTGGAATTGTCAAAGAAGGGCAACGCAATATACAACATTCTTCCAGACGTGATAAGTCGGTTATCAGACCCTGATTGTGGTATTGAAGAAGAACCTTTCAGAAATATCATGAGGTATTTGCTGTCCTTTATTCAGAAGGATCGTCAGTCTGAGAGCCTTGTGGAGAAACTGTGCCACAGATTCAGAGCAACCAAAACCGAGCGCCAGTGGCGTGATCTAGCCTTCTGTCTGTCCATGTTGTCATATAACGAGCGCGGAATCCGCAAACTACAGGAGAACTTCACTTGCTTCCACGACAAACTGGCTGAGGAAGACGTGTACCAGTCATTCCTGACCATTGTCGGCAAGAGTAAGAAATTTGCCAAACCAGAAGTCAAGGTAACCTTTATtctttag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12717 all species →	Cnd1	non-SMC mitotic condensation complex subunit 1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR007673 all species →	Family	Condensin subunit 1	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR032682 all species →	Domain	Condensin complex subunit 1, C-terminal	Interproscan
IPR026971 all species →	Family	Condensin subunit 1/Condensin-2 complex subunit D3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14222 all species →	CONDENSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030261 all species →	Biological Process	chromosome condensation	Interproscan
GO:0000779 all species →	Cellular Component	condensed chromosome, centromeric region	Interproscan
GO:0000799 all species →	Cellular Component	condensin complex	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan
GO:0010032 all species →	Biological Process	meiotic chromosome condensation	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06677	YCS4, CNAP1, CAPD2; condensin complex subunit 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.