Gene detail

Detailed information of evm.model.contig_73484.2 in Platygyra sinensis

Genomic Location: contig_73484:12505...39869
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_73484.2

ATGCAAAGTGACAAGCCTCCTGAAATTCAGTTTTTTGGTGCCTCAATGCTTCACTTCAAGATTTCTAAGAACTGGAGTGAGCTGCAAGAGGAACATTACAATGATCTGCGGTCAGAACTTTTCAAGCACATCTTTATGCTTTCGTCTGGACCAAGAATTGTTCTGACAAGACTTTGCGTTGCACTTGTTTCATTTGCTCTCCACTCCATGCCAGACCATTGGTCAAATGCAGTGAGTGACATCATAAACACACTCCAGAATGCAAGAAACTCATCGCAGAATGGAGTTTGGCCCATGGTCATGCTTGAGGTCCTTACTGTACTACCAGAAGAGTTTCATTCTGAAGACTTTGTCCCAGGACGGAAGTTAACTCTGAGAGGTGAATTGCAGGCTGGAGTCTCGCAAGTTCTTCAAGTAATTCACCAGAATTTGTCATCATCACAGCCAACGCAAGTGCGACAACAGGCACTGAAATGTTTGAGTAGCTGGGTGCAGTTTGGAGTGACAATCACTGAGGTTGATGATGCCTTACCTCAGGTGTTTGAGTCAGTTCTCAATCCTGAGTTATTCGACACAAGTGTGGACTTGATTGTTGAAGTGGCCACTCATCCATCTGGAATAAAGTATCCCAGTTACATGTGGAAATTTGTCTCCAGTGTATTGAAGCTTGGTGAGACATTGAGGTCTGCTTTACAGTCAGGAGACACAGATGCATCAAGAGGTATATGCCGAGTCATGGTGTCATTAGCTGAGACACATCTTAAACTGCTGTTGTCAGCTGACACAGGAGAAAGAGAACTACAAGGATTTACACTTATTCAGTTCTTACTGGAGTGTGCAGGTGCACCAGGCTGGTATCCCGTGGATGAGCAATGCAGTGAAATAACGTTCAACTTTTGGTATACTTTACAGGATGATATAAGTAGTGAAGAACCAAGTGCTATGGAGAAACACAAGGCTATGTATGGCCCAGTCTTCTTATCTCTATGTCAGGTGTTTATGAGGAAGGTGCAGTATCCACCAGAAAATATTTGGCAGGGATTTTCTACAGATGAGAAAGAACAGTTTAGATGCTACCGTCAGGACATAGCTGACACTGTGGTGGAAGGAGAAGATTTTTCCAATGATACTCAGATCAGAATGGTCAGCTCAGTGGAGCCTGAAATATCCATGAAAATGCTCAGAAATTTGAGTGAAAAACTCAGTGCACAATTGCCTGTGACTGCATATGGCTACTCCATCGTAAAATTTGCTGGTCTTGATGATGATTTCTCAGAATGTTTTGAACTGGAAGCAAGCCCAGTAGCAGGCCAATCACTGCAGCGAAAAGATAAGAAAAGGAGTAAAAGGGAAGGGGCAAAAAAATTACTACCGAAACAGATGTATGTTTACTGTTTACTGAGAGCTCATTGTTTACAACAATTGTATCACATGTTGTCGACGTTGTTATCTGGAGAAACTGAACCAACCTGGCAGTCATTAGATGCTACTCTGTATTTGATTCAATCTGTTGCTGAATATGTTGAACCAAATGAAGAAAGTTTCATCCCTGCTATCCTCTCCTTGTTACCAAGACTACCTGCTCACTCGTATGTCTCTCAGACAGCGCTGCTGATGGTCGGTGCTTACTCTGAATGGCTCAAGTGTCATCCTGATCATCTCCGTTCTGTTCTTCCTGTTTTGCTGGGAGGCTTATCTCAAGAGCATCTAGCATCGGCTTCTACCCAGGCCCTGCGCGGCATTTGTGAAGAGTGTGTCCAGGATTTGGAGCCTGGAACCTTGATGGAAATTCTCTCACATTGTCAGGCTGCTCTATCAGGCACTAGTATGAAGGAGCGTGAACGTATCCGTTGTGTTGAGTGTATTGGACATGTGTTATCTGTACAAGACACTGGTGGCGCATTGGAGCAAGTCAAAGCGATATTTGGTCCTTATGTGGAAGGCTTTGCTCAGCTGGTCCAGCAACAGCCTGCTTCAGAAATGAAAGCTAATCTCCAGTTTCATTTGCGGATCTTTGTGGTGTTGTTCAAATGTTTGGATCCTGACAGTGTAGAGAATCATCCTCACCCAGCTGCAGTTATACTGAATGATATTCTACCATCATTGAAGTCCATGACGTACTGGATACAAGACAATGATATACAACAACAATTCTGTCTTTGTCTGGAGAGAGCGATAGGCACTATAAGAGATCACATGGGTAGTCTTGTGTCAGGACTGTGTGAACTGCTGGTTGGTTATTTCTCTGTTTCCCCAAGCAGTGGCCTACTGGATGTGGCTTCTACGTTGATAGGAATGTATGGGATGGTTGATGAACATTACCACACAGTACTGTTAGTATTTCAACGATTCACTACATCGACATTGCAGCTTTTACAGAATAACTTGCGCGATTATCCAGACATCCTTCAGTCGTTCATGCAGCTTGTTAGTAGGGGCCTAAAAAGTAATCCCAAACTGGTGTTTGATGGAGAAAGCCATCACGTCAGCATATTTCAATGCGGCTTAGCAGTCCTTGACGTACAAGAAAGTCACACTGTTAGAGCTGCCTGCACTTTCTTTTCAACGTTCATTACCGTTTGTGACAGCCAAGAGGCAGCGAAGAATACGTTGTCAGAATATGGTCCATACCTTGTTAGTCAAGTTGTCAAGGGAATAGCCGGTGGAGTACCTCGTCAATGTACAGATTACATGGCGGAGATTCTGTTCGCGTTAAACAGACACAACGTGACGCTATTGTCACGCTGGATGCAGGACGTCATGCAGGTAGAAGGTTTTCCATCCAGCCTTGTCACTTTGTCCCATAAACAACAATTCACCAGTGCTGTGCTTAGGGCGAGGGCACATCGCAGGCGAGTCAAAGACTCTGTGAAAGAGTTTTCCTTGCAGTGTCGAGGACTTTACGGAACGGTGTATGCCAGTTAA

Transcript

evm.model.contig_73484.2

ATGCAAAGTGAcaagcCTCCTGAAATTCAGTTTTTTGGTGCCTCAATGCTTCACTTCAAGATTTCTAAGAACTGGAGTGAGCTGCAAGAGGAACATTACAATGATCTGCGGTCAGAACTTTTCAAGCACATCTTTATGCTTTCGTCTGGACCAAGAATTGTTCTGACAAGACTTTGCGTTGCACTTGTTTCATTTGCTCTCCACTCCATGCCAGACCATTGGTCAAATGCAGTGAGTGACATCATAAACACACTCCAGAATGCAAGAAACTCATCGCAGAATGGAGTTTGGCCCATGGTCATGCTTGAGGTCCTTACTGTACTACCAGAAGAGTTTCATTCTGAAGACTTTGTCCCAGGACGGAAGTTAACTCTGAGAGGTGAATTGCAGGCTGGAGTCTCgcaagTTCTTCAAGTAATTCACCAGAATTTGTCATCATCACAGCCAACGCAAGTGCGACAACAGGCACTGAAATGTTTGAGTAGCTGGGTGCAGTTTGGAGTGACAATCACTGAGGTTGATGATGCCTTACCTCAGGTGTTTGAGTCAGTTCTCAATCCTGAGTTATTCGACACAAGTGTGGACTTGATTGTTGAAGTGGCCACTCATCCATCTGGAATAAAGTATCCCAGTTACATGTGGAAATTTGTCTCCAGTGTATTGAAGCTTGGTGAGACATTGAGGTCTGCTTTACAGTCAGGAGACACAGATGCATCAAGAGGTATATGCCGAGTCATGGTGTCATTAGCTGAGACACATCTTAAACTGCTGTTGTCAGCTGACACAGGAGAAAGAGAACTACAAGgatttacacttattcagttcTTACTGGAGTGTGCAGGTGCACCAGGCTGGTATCCCGTGGATGAGCAATGCAGTGAAATAACGTTCAACTTTTGGTATACTTTACAGGATGATATAAGTAGTGAAGAACCAAGTGCTATGGAGAAACACAAGGCTATGTATGGCCCAGTCTTCTTATCTCTATGTCAGGTGTTTATGAGGAAGGTGCAGTATCCACCAGAAAATATTTGGCAGGGATTTTCTACAGATGAGAAAGAACAGTTTAGATGCTACCGTCAGGACATAGCTGACACTGTGGTGGAAGGAGAAGATTTTTCCAATGATACTCAGATCAGAATGGTCAGCTCAGTGGAGCCTGAAATATCCatgaaaatgctcagaaatttgagtgaaaaactcagtgCACAATTGCCTGTGACTGCATATGGCTACTCCATCGTAAAATTTGCTGGTCTTGATGATGATTTCTCAGAATGTtttgaactggaagcaagcccagtagcaGGCCAATCACTGCAGcgaaaagataagaaaaggagTAAAAGGGAAGGGGCAAAAAaattactaccgaaacagATGTATGTTTACTGTTTACTGAGAGCTCATTGTTTACAACAATTGTATCACATGTTGTCGACGTTGTTATCTGGAGAAACTGAACCAACCTGGCAGtcatTAGATGCTACTCTGTATTTGATTCAATCTGTTGCTGAATATGTTGAACCAAATGAAGAAAGTTTCATCCCTGCTATCCTCTCCTTGTTACCAAGACTACCTGCTCACTCGTATGTCTCTCAGACAGCGCTGCTGATGGTCGGTGCTTACTCTGAATGGCTCAAGTGTCATCCTGATCATCTCCGTTCTGTTCTTCCTGTTTTGCTGGGAGGCTTATCTCAAGAGCATCTAGCATCGGCTTCTACCCAGGCCCTGCGCGGCATTTGTGAAGAGTGTGTCCAGGATTTGGAGCCTGGAACCTTGATGGAAATTCTCTCACATTGTCAGGCTGCTCTATCAGGCACTAGTATGAAGGAGCGTGAACGTATCCGTTGTGttgagtgtattggacatgtgttATCTGTACAAGACACTGGTGGCGCATTGGAGCAAGTCAAAGCGATATTTGGTCCTTATGTGGAAGGCTTTGCTCAGCTGGTCCAGCAACAGCCTGCTTCAGAAATGAAAGCTAATCTCCAGTTTCATTTGCGGATCTTTGTGGTGTTGTTCAAATGTTTGGATCCTGACAGTGTAGAGAATCATCCTCACCCAGCTGCAGTTATACTGAATGATATTCTACCATCATTGAAGTCCATGACGTACTGGATACAAGACAATGATATACAACAACAATTCTGTCTTTGTCTGGAGAGAGCGATAGGCACTATAAGAGATCACATGGGTAGTCTTGTGTCAGGACTGTGTGAACTGCTGGTTGGTTATTTCTCTGTTTCCCCAAGCAGTGGCCTACTGGATGTGGCTTCTACGTTGATAGGAATGTATGGGATGGTTGATGAACATTACCACACAGTACTGTTAGTATTTCAACGATTCACTACATCGACATTGCAGCTTTTACAGAATAacttgcgcgatTATCCAGACATCCTTCAGTCGTTCATGCAGCTTGTTAGTAGGGGCCTAAAAAGTAATCCCAAACTGGTGTTTGATGGAGAAAGCCATCACGTCAGCATATTTCAATGCGGCTTAGCAGTCCTTGACGTACAAGAAAGTCACACTGTTAGAGCTGCCTGCACTTTCTTTTCAACGTTCATTACCGTTTGTGACAGCCAAGAGGCAGCGAAGAATACGTTGTCAGAATATGGTCCATACCTTGTTAGTCAAGTTGTCAAGGGAATAGCCGGTGGAGTACCTCGTCAATGTACAGATTACATGGCGGAGATTCTGTTCGCGTTAAACAGACACAACGTGACGCTATTGTCACGCTGGATGCAGGACGTCATGCAGGTAGAAGGTTTTCCATCCAGCCTTGTCACTTTGTCCCATAAACAACAATTCACCAGTGCTGTGCTTAGGGCGAGGGCACATCGCAGGCGAGTCAAAGACTCTGTGAAAGAGTTTTCCTTGCAGTGTCGAGGACTTTACGGAACGGTGTATGCCAGTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan
PF18806 all species →	Importin_rep_3	Importin 13 repeat	Repeat	Interproscan
PF18773 all species →	Importin_rep	Importin 13 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051345 all species →	Family	Importin beta-like nuclear transport receptors	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan
IPR040520 all species →	Repeat	Importin 13 repeat	Interproscan
IPR040709 all species →	Repeat	Importin 13, repeat 1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12363 all species →	TRANSPORTIN 3 AND IMPORTIN 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25202	IPO13, RANBP13; importin-13	-	Nucleocytoplasmic transport	ko03013	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.