Gene detail

Detailed information of evm.model.contig_74923.3 in Platygyra sinensis

Genomic Location: contig_74923:17804...20343
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051004 all species →	Family	Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22802 all species →	C-TYPE LECTIN SUPERFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0044419 all species →	Biological Process	biological process involved in interspecies interaction between organisms	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06495	SELL, CD62L; selectin, lymphocyte	-	Lectins	ko04091	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.