Gene detail

Detailed information of evm.model.contig_77907.1 in Platygyra sinensis

Genomic Location: contig_77907:1079...3244
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR001844 all species →	Family	Chaperonin Cpn60/GroEL	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45633 all species →	60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0008637 all species →	Biological Process	apoptotic mitochondrial changes	Interproscan
GO:0032727 all species →	Biological Process	positive regulation of interferon-alpha production	Interproscan
GO:0032729 all species →	Biological Process	positive regulation of type II interferon production	Interproscan
GO:0032755 all species →	Biological Process	positive regulation of interleukin-6 production	Interproscan
GO:0034514 all species →	Biological Process	mitochondrial unfolded protein response	Interproscan
GO:0042026 all species →	Biological Process	protein refolding	Interproscan
GO:0042110 all species →	Biological Process	T cell activation	Interproscan
GO:0045041 all species →	Biological Process	protein import into mitochondrial intermembrane space	Interproscan
GO:0050870 all species →	Biological Process	positive regulation of T cell activation	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_77907.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.