Gene detail

Detailed information of evm.model.contig_79227.1 in Platygyra sinensis

Genomic Location: contig_79227:1552...7787
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|DCUN1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03556 all species →	Cullin_binding	Cullin binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005176 all species →	Domain	Potentiating neddylation domain	Interproscan
IPR014764 all species →	Family	Defective-in-cullin neddylation protein	Interproscan
IPR042460 all species →	Homologous_superfamily	DCN1-like, PONY binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12281 all species →	RP42 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032182 all species →	Molecular Function	ubiquitin-like protein binding	Interproscan
GO:0045116 all species →	Biological Process	protein neddylation	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_79227.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.