Gene detail

Detailed information of evm.model.contig_79355.1 in Platygyra sinensis

Genomic Location: contig_79355:228...10505
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_79355.1

ATGGGTGAAGCCGCTGACAAGGCTGCCTGCCGCGAAGACGGAACAATTGCAACCTACCACTGCCTCCAAGACGGAATCAGGATGTCGGAAACACTAACGTTTGGACCGGAGTGGCTCCGCGCATTGTCAAGTGGAAACAGTGTTACATCCCCTCCCCCCTCCCCTGGACCTAAGTACAAACTTGCTGAACACCGGTATGGAAAGGAGGAGATGCTGGCATTGTTCAGTGAAGATGTCGAGATGCCCAAGGAGCTGGAGATGTTTGACTCCATCTGCAGAAACAGACCAGTGCTTCCTTTAGCTTTTCAACCTCTTACAGAAGAAGAGCAGAGGAACTCTGTTGGGTCTGTTAACAGCAATGCTGTGTTGAAGTTAATGGGTCGAGGCGGGGCGCGGGGAGTAGGCCCTCCAAGAGGACCAGGGCGTGGAGGATTGAGAGGTCGTGGCAGAGGTGATGGGGGATTTGTGAGACAAACATCTTATGAAGAATCCAGGGTTGAGGGTGGAGGGGGCTTTGGTCGAGGCAGTGACACTCGCAGACAAGGATGGAATGAGAACAGTCGTGGAGGCTTTGAAAGATCGCCAAGCCTCAGAGAATCAGGTCCTTCTGGTCCTGGTAGAGGTGGGTATGATCCATCACTAAGTCGACCTCGCTTGTCAAGTGACACATCTTGGGAAAGACCTGAGAGAAGATCAGATAGCAGCAACTGGAGAGCAGGGGGTGAAGATGAGGAGGGGTGGAGAGTATCAGGGCAACGATCTGCAGACAGATCAGACAGATGGAGAGGGGGTTCTTCCAGAGGCAGAACACCATGGCGTGGGGGAACAGAAACATACAGAGAACGAGGTCACCCTGATGATGAATGGCAAACAGCCCGGGGCAGTCGTCGGTCTTATCATGATCATGAAGACGTTCGGTGGGGCTCATCAAGTGAAAGACTTCCCGAATGGAGTAATGATGATAATGACGATTTTACAACACCAGGGACTTTCGATTCGTCAGGAGCATTTGTATCAAAGCAAAAGGAAGAAAGAGAGAGAATTAAAGCTGAAACAAAAAGTGACGAAAAAAGTGAAAATACAGAGAAAAATAGGAAATCTCAGTCGGAAAGTGATACTGAAGAACCTGATGTATGGAAAGAAGAAGAGCAAGGGACAAGAAACACCAGTGAAGAGAAACCTACAGAAACACCACAATCACAACCGCCAGCATCACAACCACCTTCAACAGATGAAACGTCTGATTCCATAAAAAAGCCATCTCCATCCTCCATTTCTTCTTCTCCTTCACCACCCCAGACATCTACTTCACAAAACAGACCACCAAATTCCACACAATCTAATGCACCTAGCAAACCTCTGCCAGCAGAGCCCTCCTCGCAAGCTCATGTCTCACCACAGCCTCAGATCACTATGCCATCCCCTTCACTGGAGCAAGACACAACTGTCAGGAAAGACGAAGAACCCAATATGGAACATTTTGCAAAAGCGGCTGAAAACCTTGTAGCTTCTTTGGATGATGACGATGATGATGATGAAGAGGGGAATTTACAGAGTGTTGAACAGACAACTACACAACAACAGCAACAGGATTATCGCAGCTCTCCACCAACTCCAGATGAAGTGCAGTGGAGTTACACTGATCCTCAGGGAAAAGTACAGGGTCCATTTTCCAACTCTGAAATGGCCGACTGGTTCAGTCATGGATACTTCACCATGGGGCTGCTTGTTAAACGAACAACTGATGAGGCTTTTCAGCCACTCGGTGAAGTTATTAAGCAGTGGGGTCGAGTGCCCTTTATTCCTGGTCCTCAGCCACCACCTTACAAGGGTGTCCCTGAACACATCCAGCGACAACAGCAGCAGATGATAGCACAGCAGCAATACCAACATCTGATGCAACAACATTACCTTCAACAGCAGTTGTTTCACCAGCAAGCTCTCATGATGCAGGTAGAGGGCACATTTTTAGACACAAGGGAACTAGCCTGCGTAGCAAGCGTTTCCGTGGAGCAAAGAGCGGAGGAAACGGGGTTTTCGGCGTTTTGCCCGCGCGAAAAATGGGGCGAGAGCAAAAATAAGAAGGAGGGGGTGGGGGAGGGGAAGGAAGGAAACGCTTGCCGCCAAGCATTGTGA

Transcript

evm.model.contig_79355.1

ATGGGTGAAGCCGCTGACAAGGCTGCCTGCCGCGAAGACGGAACAATTGCAACCTACCACTGCCTCCAAGACGGAATCAGGATGTCGGAAACACTAACGTTTGGACCGGAGTGGCTCCGCGCATTGTCAAGTGGAAACAGTGTTacatcccctcccccctcccctggaCCTAAGTACAAACTTGCTGAACACCGGTATGGAAAGGAGGAGATGCTGGCATTGTTCAGTGAAGATGTCGAGATGCCCAAGGAGCTGGAGATGTTTGACTCCATCTGCAGAAACAGACCAGTGCTTCCTTTAGCTTTTCAACCTCTTACAGAAGAAGAGCAGAGGAACTCTGTTGGGTCTGTTAACAGCAATGCTGTGTTGAAGTTAATGGGTCGAGGCGGGGCGCGGGGAGTAGGCCCTCCAAGAGGACCAGGGCGTGGAGGATTGAGAGGTCGTGGCAGAGGTGATGGGGGATTTGTGAGACAAACATCTTATGAAGAATCCAGGGTTGAGGGTGGAGGGGGCTTTGGTCGAGGCAGTGACACTCGCAGACAAGGATGGAATGAGAACAGTCGTGGAGGCTTTGAAAGATCGCCAAGCCTCAGAGAATCAGGTCCTTCTGGTCCTGGTAGAGGTGGGTATGATCCATCACTAAGTCGACCTCGCTTGTCAAGTGACACATCTTGGGAAAGACCTGAGAGAAGATCAGATAGCAGCAACTGGAGAGCAGGGGGTGAAGATGAGGAGGGGTGGAGAGTATCAGGGCAACGATCTGCAGACAGATCAGACAGATGGAGAGGGGGTTCTTCCAGAGGCAGAACACCATGGCGTGGGGGAACAGAAACATACAGAGAACGAGGTCACCCTGATGATGAATGGCAAACAGCCCGGGGCAGTCGTCGGTCTTATCATGATCATGAAGACGTTCGGTGGGGCTCATCAAGTGAAAGACTTCCCGAATGgagtaatgatgataatgacgatTTTACAACACCAGGGACTTTCGATTCGTCAGGAGCATTTGTATCAAAGCAAAAGGAAGAAAGAGAGAGAATTAAAGCTGAAACAAAAAGTgacgaaaaaagtgaaaatacaGAGAAAAATAGGAAATCTCAGTCGGAAAGTGATACTGAAGAACCTGATGTATGGAAAGAAGAAGAGCAAGgGACAAGAAACACCAGTGAAGAGAAACCTACAGAAACACCACAATCACAACCGCCAGCATCACAACCACCTTCAACAGATGAAACGTCTGATTCCATAAAAAAGCCATCTCCATCCTCcatttcttcttctccttcacCACCCCAGACATCTACTTCACAAAACAGACCACCAAATTCCACACAATCTAATGCACCTAGCAAACCTCTGCCAGCAGAGCCCTCCTCGCAAGCTCATGTCTCACCACAGCCTCAGATCACTATGCCATCCCCTTCACTGGAGCAAGACACAACTGTCAGGAAAGACGAAGAACCCAATATGGAACATTTTGCAAAAGCGGCTGAAAACCTTGTAGCTTCTTtggatgatgacgatgatgatgatgaagagGGGAATTTACAGAGTGTTGAACAGACAACtacacaacaacagcaacaggaTTATCGCAGCTCTCCACCAACTCCAGATGAAGTGCAGTGGAGTTACACTGATCCTCAGGGAAAAGTACAGGGTCCATTTTCCAACTCTGAAATGGCCGACTGGTTCAGTCATGGATACTTCACCATGGGGCTGCTTGTTAAACGAACAACTGATGAGGCTTTTCAGCCACTCGGTGAAGTTATTAAGCAGTGGGGTCGAGTGCCCTTTATTCCTGGTCCTCAGCCACCACCTTACAAGGGTGTCCCTGAACACATCCAGCGACAACAGCAGCAGATGATAGCACAGCAGCAATACCAACATCTGATGCAACAACATTACCTTCAACAGCAGTTGTTTCACCAGCAAGCTCTCATGATGCAGGTAGAGGGCACATTTTTAGACACAAGGgaactagcctgcgtagcaagcgtttccgtggagcaaagagcggaggaaacggggttttcggcgttttgcccgcgcgaaaaatggggcgagagcaaaaataagaaggagggggtgggggaggggaaggaaggaaacgcttgccgccaagcattgtga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02213 all species →	GYF	GYF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035445 all species →	Homologous_superfamily	GYF-like domain superfamily	Interproscan
IPR051640 all species →	Family	GRB10-interacting GYF	Interproscan
IPR003169 all species →	Domain	GYF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14445 all species →	GRB10 INTERACTING GYF PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_79355.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.